View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3672_low_6 (Length: 233)
Name: NF3672_low_6
Description: NF3672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3672_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 43017252 - 43017059
Alignment:
| Q |
21 |
taaagagtagtggaacgaggatttcaaggtgataaggtcaatgttgttttggtagacctccccaatcatatatttaatcatcggaagtattaattagtcc |
120 |
Q |
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| T |
43017252 |
taaagagtagtggaacgaggatttcaaggtgataaggtcaatgttgttttggtagacctccccaatcatatatttaatcatcggaagtatta----gtcc |
43017157 |
T |
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| Q |
121 |
atgttttgtttcacatttagaggagatgaactcgattatgcaggtgtagaattaattgtttcaacatgttagtgtctttgttgtgtccgttgtctgtg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017156 |
atgttttgtttcacatttagaggagatgaactcgattatgcaggtgtagaattaattgtttcaacatgttagtgtctttgttgtgtccgttgtctgtg |
43017059 |
T |
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