View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3673_high_11 (Length: 227)
Name: NF3673_high_11
Description: NF3673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3673_high_11 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 5726433 - 5726654
Alignment:
| Q |
6 |
ataaacaacaaaaaatttcgttttcactctttgacattttggaatgttgtttatatgacctcgtgtagtgtcatttaaatttcacatctaaattgaatat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5726433 |
ataaacaacaaaaaatttcgttttcactctttgacattttggaatgttgtttatatgacctcgtgtagtgtcatttaaatttcacatctaaattgaatat |
5726532 |
T |
|
| Q |
106 |
ttcacgaaagtaattaagaatattgagaagtgatcatattcatgatagttttcacaaataagaatagagagaaataccaattaatatcttctttttccga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5726533 |
ttcacgaaagtaattaagaatattgagaagtgatcatattcatgatagttttcacaaataagaatagagagaaataccaattaatatcttctttttccga |
5726632 |
T |
|
| Q |
206 |
agggtttttgtatgttggaaaa |
227 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
5726633 |
agggtttgtgtatgttggaaaa |
5726654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University