View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3673_high_3 (Length: 318)
Name: NF3673_high_3
Description: NF3673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3673_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 312
Target Start/End: Original strand, 34818215 - 34818523
Alignment:
| Q |
6 |
aagatcgggatactgtaaag-attaaaatttgcaaaatgttattggaagataaagattgtcacacatacaaaaacactacatatactataatatcatttc |
104 |
Q |
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| T |
34818215 |
aagatcgggatactgtaaaggattaaaatttgcaaaatgttattggaagataaagattgtcacacatacaaaaacactacatatactataatatcatttc |
34818314 |
T |
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| Q |
105 |
gtcaacaaaaaatgtactataat--actattcatggtataattacattgaacctctatttcgtcaatataaatttcttaatttatacgcattagtgtaat |
202 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34818315 |
gtcaacaaaaaatgtactataatacactattcatggtataattacattgaacctctatttcgtcaatataaatttcttaatttatacgcattagtgtaat |
34818414 |
T |
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| Q |
203 |
-aaaagagcggataatatatgtgtccgtctagacgctagtagtatataaagtatgtgtgcgtatatctttgtgtgtttattatcttccaaaaggacaacc |
301 |
Q |
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||||||||||||| ||||||| |||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34818415 |
aaaaagagcggata--atatgtgcccgtctagacactagcagtatataaagtatgtgtgtgtatatctttgtgtgtttattatcttccaaaaggacaacc |
34818512 |
T |
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| Q |
302 |
ctaaagccttt |
312 |
Q |
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||||||||||| |
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| T |
34818513 |
ctaaagccttt |
34818523 |
T |
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