View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3673_low_10 (Length: 232)
Name: NF3673_low_10
Description: NF3673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3673_low_10 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 9691962 - 9692175
Alignment:
| Q |
19 |
aatatttgaatacatacattgagatggttgcttcaacaaattgtgagagacatcaggatcaacccaatcataagacttaatgtgcatttgtcccaacaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9691962 |
aatatttgaatacatacattgagatggttgcttcaacaaattgtgagagacatcaggatcaacccaatcataagacttaatgtgcatttgtcccaacaaa |
9692061 |
T |
|
| Q |
119 |
agcttactgaaaacagtcattcctgggtggttatgaagaggaatgactccttttgaaggtaggnnnnnnntacatagctgcatgtacnnnnnnntacact |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
9692062 |
agcttactgaaaacagtcattcctgggtggttatgaagaggaatgactccttttgaaggtaggaaaaaaatacatagctgcatgtacaaaaaaatacact |
9692161 |
T |
|
| Q |
219 |
taaattaattacat |
232 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9692162 |
taaattaattacat |
9692175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 169
Target Start/End: Complemental strand, 33528535 - 33528418
Alignment:
| Q |
52 |
caacaaattgtgagagacatcaggatcaacccaatcataagacttaatgtgcatttgtcccaacaaaagcttactgaaaacagtcattcctgggtggtta |
151 |
Q |
| |
|
|||||| ||||||||| | ||| |||||||||||||||||||||||||||||||||| || || | ||| || |||||||||||||| |||||||||||| |
|
|
| T |
33528535 |
caacaagttgtgagaggcctcatgatcaacccaatcataagacttaatgtgcatttgccctaatagaagtttgctgaaaacagtcatgcctgggtggtta |
33528436 |
T |
|
| Q |
152 |
tgaagaggaatgactcct |
169 |
Q |
| |
|
|| || |||||||||||| |
|
|
| T |
33528435 |
tggaggggaatgactcct |
33528418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 2201709 - 2201621
Alignment:
| Q |
81 |
cccaatcataagacttaatgtgcatttgtcccaacaaaagcttactgaaaacagtcattcctgggtggttatgaagaggaatgactcct |
169 |
Q |
| |
|
||||||||||||| || |||||||| ||| || | |||||| || ||||| |||||||| ||||| || ||||||||||| |||||| |
|
|
| T |
2201709 |
cccaatcataagatttgatgtgcatagttccaaatagaagcttgctaaaaaccgtcattccagggtgattgtgaagaggaataactcct |
2201621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University