View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3673_low_4 (Length: 279)
Name: NF3673_low_4
Description: NF3673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3673_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 36510874 - 36511132
Alignment:
| Q |
1 |
tatttgaggttttgtttgaagaaaacgttgaatgtttggttgaagtagcgaaagaaagagaaaacgccatagatttagattgttagtaacgtgccttggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
36510874 |
tatttgaggttttgtttgaagaaaacgttgaatgtttggttgaagtagcgaaagaaagagaaaaagccatagatttagattgttagtaacgtgtcttggt |
36510973 |
T |
|
| Q |
101 |
ttgagtagtaagagagat--gagaaacacagaaaataagcattggatttatagaccaatgcttgttcgtgaaaaacatgcacgtacggcaatctttgacc |
198 |
Q |
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|||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36510974 |
ttgagtagtaagagagatacgagaaacgcataaaataagcattggatttatagaccaatgcttgttcgtgaaaaacatgcacgtacggcaatctttgacc |
36511073 |
T |
|
| Q |
199 |
aaacatcatcttgacataactaaagattatgtcgaatttactttgctttcaaacatcga |
257 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36511074 |
aaacatcatcttaacataactaaagattatgtcgaatttattttgctttcaaacatcga |
36511132 |
T |
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