View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3673_low_6 (Length: 250)

Name: NF3673_low_6
Description: NF3673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3673_low_6
NF3673_low_6
[»] chr2 (2 HSPs)
chr2 (1-242)||(5726894-5727144)
chr2 (17-96)||(26618212-26618291)
[»] chr1 (2 HSPs)
chr1 (44-105)||(26088763-26088824)
chr1 (17-100)||(15470952-15471035)
[»] chr7 (2 HSPs)
chr7 (25-97)||(7414749-7414821)
chr7 (44-100)||(31266820-31266876)
[»] chr5 (1 HSPs)
chr5 (17-100)||(15798823-15798905)
[»] chr4 (1 HSPs)
chr4 (42-100)||(42420450-42420508)
[»] chr8 (1 HSPs)
chr8 (25-101)||(9944543-9944619)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5726894 - 5727144
Alignment:
Q  1 aaatgcctctggcgtgaactcatgcatgtgttaatcttgcatgagttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  5726894 aaatgcctctggcgtgaactcatgcatgtgttaatcttgcgtgagttaacttacgctgcgtgtcattttaaaggtcatacataacctcatttcctcattt 5726993  T
Q  101 ttcattattttctcgataaaaagagtg---------ttttgataatttgtacttcgaataaaaaggttttcatagtttagtgaacgatttgagatttatt 191  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5726994 ttcattattttctcgataaaaagagtgttttgatatttttgataatttgtacttcgaataaaaaggttttcatagtttagtgaacgatttgagatttatt 5727093  T
Q  192 tttatgggtagtgagagacaaatattcatgtttagtcatttgtcctttgct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5727094 tttatgggtagtgagagacaaatattcatgtttagtcatttgtcctttgct 5727144  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 26618291 - 26618212
Alignment:
Q  17 aactcatgcatgtgttaatcttgcatgagttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctc 96  Q
    |||||| ||||||||||| |  |  |||||||||| || || |||||| |||||||||||||||||||||||||||||||    
T  26618291 aactcacgcatgtgttaaaccagtgtgagttaactcacactacgtgtccttttaaaggtcagacataacctcatttcctc 26618212  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 26088763 - 26088824
Alignment:
Q  44 agttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcatttttcat 105  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  26088763 agttaactcacgctgcgtgtccttttaaaggtcagacataacctcattttctcatttctcat 26088824  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 15470952 - 15471035
Alignment:
Q  17 aactcatgcatgtgttaatcttgcatgagttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcattt 100  Q
    |||||| ||||||||||| |  || |||||||||| ||| ||||| || |||||||| |||||||||| |||||||||||||||    
T  15470952 aactcacgcatgtgttaaaccagcgtgagttaactcacgttgcgtatccttttaaagctcagacataagctcatttcctcattt 15471035  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 7414821 - 7414749
Alignment:
Q  25 catgtgttaatcttgcatgagttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctca 97  Q
    |||||||||||  ||| |||||||||| |||||||||||||||||||||| || | | |||||||||||||||    
T  7414821 catgtgttaattctgcgtgagttaactcacgctgcgtgtctttttaaaggccaaatagaacctcatttcctca 7414749  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 31266820 - 31266876
Alignment:
Q  44 agttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcattt 100  Q
    |||||||| || ||| ||||| ||||||| |||||||| ||| ||||||||||||||    
T  31266820 agttaactcacactgtgtgtccttttaaaagtcagacaaaacttcatttcctcattt 31266876  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 15798905 - 15798823
Alignment:
Q  17 aactcatgcatgtgttaatcttgcatgagttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcattt 100  Q
    |||||||||  |||||||| |||| ||| |||||| ||| |||||||  ||||||||| |||||||||||| ||||||||||||    
T  15798905 aactcatgctagtgttaattttgcgtgacttaactcacgttgcgtgttattttaaagg-cagacataaccttatttcctcattt 15798823  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 42420450 - 42420508
Alignment:
Q  42 tgagttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcattt 100  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||  |||| |||||||    
T  42420450 tgagttaactcacgctgcgtgtcgttttaaaggtcagacagaaccctattttctcattt 42420508  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 9944543 - 9944619
Alignment:
Q  25 catgtgttaatcttgcatgagttaacttacgctgcgtgtctttttaaaggtcagacataacctcatttcctcatttt 101  Q
    |||||||||||| |||  |||||| || |||||||||||  |||| |||| ||| || |||||||||| ||||||||    
T  9944543 catgtgttaatcctgcgcgagttagctcacgctgcgtgttgttttcaaggccaggcagaacctcattttctcatttt 9944619  T

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