View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3673_low_9 (Length: 232)
Name: NF3673_low_9
Description: NF3673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3673_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 14541080 - 14541281
Alignment:
| Q |
13 |
tggacatcatcccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatatgtagaagataatagtaaattta |
112 |
Q |
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| T |
14541080 |
tggacatcataccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatatgtagaagataatagtaaattta |
14541179 |
T |
|
| Q |
113 |
gatgtattatagatgtttgtagacaagtgtttcaaagtaattttgaaaactctcgtattgagtttaatatgaggcaaactaatgtgatcgttcacaagtt |
212 |
Q |
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| T |
14541180 |
gatgtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaatatgaggcaaactaatgtggtcgttcacaagtt |
14541279 |
T |
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| Q |
213 |
tg |
214 |
Q |
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|| |
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| T |
14541280 |
tg |
14541281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 712145 - 712314
Alignment:
| Q |
12 |
atggacatcatcccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatatgtagaagataatagtaaattt |
111 |
Q |
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||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||| | || ||||| |
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| T |
712145 |
atggacatcataccttcaatttgataatgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaattt |
712244 |
T |
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| Q |
112 |
agatgtattatagatgtttgtagacaagtgtttcaaagtaattttgaaaactctcgtattgagtttaata |
181 |
Q |
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| T |
712245 |
ggatgtattatacttgcatgtagatagttgtttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 717356 - 717544
Alignment:
| Q |
13 |
tggacatcatcccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatatgtagaagataatagtaaattta |
112 |
Q |
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||||||||| ||||||||||||||||||| |||| ||||||||||| ||||| |||| ||||||||||||| || ||||| ||||| |||| ||||| |
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| T |
717356 |
tggacatcacaccttcaatttgataatgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagtgaatttg |
717455 |
T |
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| Q |
113 |
gatgtattatagatgtttgtagacaagtgtttcaaagtaattttgaaaactctcgtattgagtttaatatgaggcaaactaatgtgatc |
201 |
Q |
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| T |
717456 |
gatgtattatagttgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatc |
717544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 36724378 - 36724254
Alignment:
| Q |
13 |
tggacatcatcccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatatgtagaagataatagtaaattta |
112 |
Q |
| |
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||||||||| |||||||||||||||| | ||||||||||||||||| |||| |||||||||| |||||||| || |||||| |||| |||||| |
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| T |
36724378 |
tggacatcagaccttcaatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagatagtagtgaattta |
36724279 |
T |
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| Q |
113 |
gatgtattatagatgtttgtagaca |
137 |
Q |
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|||| |||||||||| ||||||||| |
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| T |
36724278 |
gatgcattatagatgcttgtagaca |
36724254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 2087499 - 2087394
Alignment:
| Q |
91 |
gtagaagataatagtaaatttagatgtattatagatgtttgtagacaagtgtttcaaagtaattttgaaaactctcgtattgagtttaatatgaggcaaa |
190 |
Q |
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|||||||||| || | | ||||| |||||||||||||| ||| |||| |||||||||||| ||| ||||||||| | || | ||||||| |||||||| |
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| T |
2087499 |
gtagaagatagtattgagtttagttgtattatagatgtctgttgacacttgtttcaaagtagatttcaaaactctcatgttaaatttaatacgaggcaaa |
2087400 |
T |
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| Q |
191 |
ctaatg |
196 |
Q |
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|||||| |
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| T |
2087399 |
ctaatg |
2087394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 14857024 - 14856980
Alignment:
| Q |
158 |
aaaactctcgtattgagtttaatatgaggcaaactaatgtgatcg |
202 |
Q |
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| T |
14857024 |
aaaactctcatgtcgagtttaatatgaggcaaacaaatgtgatcg |
14856980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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