View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3674_high_3 (Length: 361)
Name: NF3674_high_3
Description: NF3674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3674_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 3566033 - 3566378
Alignment:
| Q |
14 |
agaccataatgaagaagatgaggatgaaaagtagattacacaacctttgtccactcctgacatagtccagaaggatatagactttcttaaaaactcatgg |
113 |
Q |
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| T |
3566033 |
agaccataatgaagaagatgaggatgaagagcagattacacaacctttgtccactcctgacatagtccagaaggatatagactttcttaaaaactcatgg |
3566132 |
T |
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| Q |
114 |
gccaacattgtggaaaataaagatgcagatacacgttttttacaaaccttagaaaagttcctgaagcgaacaccttacaagtcattgatagtgatggttt |
213 |
Q |
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| T |
3566133 |
gccaacattgtggaaaataaagatgcagatacacgttttttacaaaccttagaaaagttcctgtagcaaacaccttacaagtcattgatagtgatggttt |
3566232 |
T |
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| Q |
214 |
tcagatgaaagtatcaaaacaccaaaagaaagctcagaagaagctcagtcacacaggaatagaagttattacaaccagatcaaaggttataagacacctt |
313 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3566233 |
tcatatgaaagtatcaaaacaccaaaagaaagctcagaagaagctcagtcacacaggaatagaagttattacaaccagatcaaaggttataagacacctt |
3566332 |
T |
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| Q |
314 |
tcaaatgaagtatatatattggaatgtaataggcctagctaatccc |
359 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3566333 |
tcaaatgaagtacatatattggaatgtaataggcctagctaatccc |
3566378 |
T |
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