View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3674_high_6 (Length: 343)
Name: NF3674_high_6
Description: NF3674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3674_high_6 |
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| [»] chr5 (7 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 21 - 343
Target Start/End: Complemental strand, 34232400 - 34232077
Alignment:
| Q |
21 |
tcaacattccttgagatttggtctattgaagtgaagcaattttgag-gaggagcaaagattctgctgtttcaaacaaccaatttggcacccttccattaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34232400 |
tcaacattccttgagatttggtctattgaagtgaagcaattttgagagaggttcaaagattctgctgtttcaaacaaccaatttggcacccttccattaa |
34232301 |
T |
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| Q |
120 |
gattgttattggacaaatcaaaataatccaaacttaggaatttttctgataatatgggaaagtttgtcaagttgatagaagataaatccaattcccttag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34232300 |
gattgttattggacaaatcaaaataatccaaacttaggaatttttctgataatatgggaaagtttgtcaagttgatagaagacaaatccaattcccttag |
34232201 |
T |
|
| Q |
220 |
atgagaaaaattgtaactaacattggattcaaaggttagtgataattgtgtattctgtgaaagggacaaagaatacaaattttgaagtttgccaaagtgt |
319 |
Q |
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| T |
34232200 |
atgagaaaaattgtaactgacattggattcaaaggttagtgataattgtgtattctgtgaaagggacaaagaatacaaattttgaagtttgccaaagtgt |
34232101 |
T |
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| Q |
320 |
tgaaaattgacaacaccactcaag |
343 |
Q |
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|||||||||||||||||||||||| |
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| T |
34232100 |
tgaaaattgacaacaccactcaag |
34232077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 197 - 343
Target Start/End: Complemental strand, 34239975 - 34239829
Alignment:
| Q |
197 |
gaagataaatccaattcccttagatgagaaaaattgtaactaacattggattcaaaggttagtgataattgtgtattctgtgaaagggacaaagaataca |
296 |
Q |
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| T |
34239975 |
gaagacaaatccaattttgttagttgagaaaaatggtaagtaacattgtattcaaagtttagtgataattggctattatgtgaaagggacagagaatcca |
34239876 |
T |
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| Q |
297 |
aattttgaagtttgccaaagtgttgaaaattgacaacaccactcaag |
343 |
Q |
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| T |
34239875 |
atttttgaagttttgtaaagtcttgaaaattgacaacaccactcaag |
34239829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 95 - 343
Target Start/End: Original strand, 42129461 - 42129706
Alignment:
| Q |
95 |
aaccaatttggcacccttccattaagattgttattggacaaatcaaaataatccaaacttaggaatttttctgataatatgggaaagtttgtcaagttga |
194 |
Q |
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||||||| ||||||| |||||||||| ||||||||||||||||||| | |||| || | ||| ||| |||||| ||||||| | |||||| |||| |
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| T |
42129461 |
aaccaatctggcacctttccattaagtttgttattggacaaatcaagagaatctaacaatgggactttccctgata---tgggaaattctgtcaaattga |
42129557 |
T |
|
| Q |
195 |
tagaagataaatccaattcccttagatgagaaaaattgtaactaacattggattcaaaggttagtgataattgtgtattctgtgaaagggacaaagaata |
294 |
Q |
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||||||| |||||||||| ||||| ||||||||||||| | ||||||| |||||| |||| ||||||||| |||| |||||||| |||| || | |
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| T |
42129558 |
tagaagacaaatccaattttgatagataagaaaaattgtaattgacattgggttcaaatgttaatgataattggctattatgtgaaagtgacagagtttt |
42129657 |
T |
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| Q |
295 |
caaattttgaagtttgccaaagtgttgaaaattgacaacaccactcaag |
343 |
Q |
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||||| |||||||||| |||||||||||||| | |||| |||||||| |
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| T |
42129658 |
caaatattgaagtttggaaaagtgttgaaaatcaataacatcactcaag |
42129706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 343
Target Start/End: Complemental strand, 41571402 - 41571282
Alignment:
| Q |
223 |
agaaaaattgtaactaacattggattcaaaggttagtgataattgtgtattctgtgaaagggacaaagaatacaaattttgaagtttgccaaagtgttga |
322 |
Q |
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||||||||||||||| ||||||||||||||| | |||||||||| |||| ||||||||||||| ||||| |||||||||||||||| ||||| || | |
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| T |
41571402 |
agaaaaattgtaactgacattggattcaaagttcggtgataattgactattatgtgaaagggacagagaattcaaattttgaagtttggaaaagtattta |
41571303 |
T |
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| Q |
323 |
aaattgacaacaccactcaag |
343 |
Q |
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|||||||||| |||||||||| |
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| T |
41571302 |
aaattgacaataccactcaag |
41571282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 339
Target Start/End: Complemental strand, 41713070 - 41712827
Alignment:
| Q |
96 |
accaatttggcacccttccattaagattgttattggacaaatcaaaataatccaaacttaggaatttttctgataatatgggaaagtttgtcaagttgat |
195 |
Q |
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||||||||||||| |||||||||| |||||||| |||| ||||||||| | |||| || | |||| |||||||| | | ||| ||||| | | |
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| T |
41713070 |
accaatttggcactcttccattaattttgttattagacagatcaaaatatttcaaatttgaaagttttcctgataattttgaaaatcgagtcaaactcaa |
41712971 |
T |
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| Q |
196 |
agaagataaatccaattcccttagatgagaaaaattgtaactaacattggattcaaaggttagtgataattgtgtattctgtgaaagggacaaagaatac |
295 |
Q |
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|||||||||||||||||| |||| ||||||||||||||| | ||| ||||||||||| ||||||| ||||| |||| |||||||||||| || |||| |
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| T |
41712970 |
agaagataaatccaattctattagttgagaaaaattgtaattgacaatggattcaaagtttagtgacaattgattattaagtgaaagggacagag-atac |
41712872 |
T |
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| Q |
296 |
-aaattttgaagtttgccaaagtgttgaaaattgacaacaccact |
339 |
Q |
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| T |
41712871 |
tagattttgaagttcggagaagtattgaaaatcaacaacaccact |
41712827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 34240137 - 34240023
Alignment:
| Q |
27 |
ttccttgagatttggtctattgaagtgaagcaattttgag-gaggagcaaagattctgctgtttcaaacaaccaatttggcacccttccattaagattgt |
125 |
Q |
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||||||||||||||||||||||| ||||| | ||||||| |||| ||||||| || |||||||| |||||||| | ||| |||||||||| |||| |
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| T |
34240137 |
ttccttgagatttggtctattgatgtgaacaagttttgagagaggttcaaagatcttgatgtttcaagtaaccaattggacactgttccattaagtttgt |
34240038 |
T |
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| Q |
126 |
tattggacaaatcaa |
140 |
Q |
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||||||||||||||| |
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| T |
34240037 |
tattggacaaatcaa |
34240023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 41571541 - 41571459
Alignment:
| Q |
87 |
tttcaaacaaccaatttggcacccttccattaagattgttattggacaaatcaaaataatccaaacttaggaatttttctgat |
169 |
Q |
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|||||| ||||||||| ||||| ||||||| ||| ||||| ||||||||||||| ||| |||||| |||||||| ||||| |
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| T |
41571541 |
tttcaagcaaccaattgggcactcttccataaagtttgttgttggacaaatcaagatatctcaaactagggaattttcctgat |
41571459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 343
Target Start/End: Original strand, 12249196 - 12249305
Alignment:
| Q |
234 |
aactaacattggattcaaaggttagtgataattgtgtattctgtgaaagggacaaagaatacaaattttgaagtttgccaaagtgttgaaaattgacaac |
333 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||| ||||||||||||| | || |||| ||||||||| |||| ||||||||| ||||| |
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| T |
12249196 |
aactgacattggattcaaaggttagtgataattggctattatgtgaaagggacagaaaaaacaaccaatgaagtttggaaaagagttgaaaatcaacaac |
12249295 |
T |
|
| Q |
334 |
accactcaag |
343 |
Q |
| |
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|||||||||| |
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| T |
12249296 |
accactcaag |
12249305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 12249041 - 12249129
Alignment:
| Q |
73 |
caaagattctgctgtttcaaacaaccaatttggcacccttccattaagattgttattggacaaatcaaaataatccaaacttaggaatt |
161 |
Q |
| |
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||||||| ||| | |||||| ||||||||| ||||| ||||||||||| || ||||| |||||||||| | |||| || ||| |||||| |
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| T |
12249041 |
caaagatcctgatatttcaagcaaccaattgggcacgcttccattaagtttattatttgacaaatcaagagaatctaatcttgggaatt |
12249129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 343
Target Start/End: Original strand, 8523613 - 8523861
Alignment:
| Q |
95 |
aaccaatttggcacccttccattaagattgttattggacaaatcaaaataatccaaacttaggaatttttctgataatatgggaaagtttgtcaagttga |
194 |
Q |
| |
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|||||||||||||| |||||| ||| |||||||| |||| ||||| ||| |||| || ||| ||||||||| || | ||||| | ||||| | | |
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| T |
8523613 |
aaccaatttggcacacttccactaattttgttattagacagatcaagatataccaacattgggagtttttctgagaagttaggaaactcagtcaaactca |
8523712 |
T |
|
| Q |
195 |
tagaagataaatccaattcccttagatgagaaaaattgtaactaacattggattcaaaggttagtgataattgtgtattctgtgaaagggacaaagaata |
294 |
Q |
| |
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|||||| ||| |||||||| |||||| | ||||| | ||| | ||| ||||||||||| ||| ||||||||| |||| | |||||| |||| | | |
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| T |
8523713 |
aagaagacaaacccaattccattagatcaaaaaaactataattgacactggattcaaagtttactgataattggctattatctgaaagctgcaaaaattt |
8523812 |
T |
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| Q |
295 |
caaattttgaagtttgccaaagtgttgaaaattgacaacaccactcaag |
343 |
Q |
| |
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||||| |||||| ||| || || ||| ||||||||||||||||||||| |
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| T |
8523813 |
caaatgttgaaggttggaaatgttttggaaattgacaacaccactcaag |
8523861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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