View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3674_high_7 (Length: 325)
Name: NF3674_high_7
Description: NF3674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3674_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 54600936 - 54601182
Alignment:
| Q |
1 |
ctaaaatcatatatattttgcacaatctagcataaacttgaaggacttatcactttcccatttttctccatccaggcccgtactccaaagacaaaataat |
100 |
Q |
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| T |
54600936 |
ctaaaatcatatatattttgcacaatctagcataaacttgaaggacttatcactttcccatttttctccatccaggcccgtactccaaagagaaaataat |
54601035 |
T |
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| Q |
101 |
acatacaataaacaaatagtgttttacattatcttagttgaaaatagtgagataaaggcatatttaaagcgttcataattaaataatgttgatcgatgtc |
200 |
Q |
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| T |
54601036 |
acatacaataaacaaatagtgttttacattatcttagttgaaaatagtgagataaaggcatatttaaagcgttcataattaaataatgttgatcgatgtc |
54601135 |
T |
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| Q |
201 |
atcattaaaaaataagtaaagaaagggatgtcttttgtctaattaag |
247 |
Q |
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| T |
54601136 |
atcattaaaaaataagtgaagaaagggatgtcttttgtctaattaag |
54601182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 54601253 - 54601311
Alignment:
| Q |
262 |
gtttattcatttctatggtatggagtatgggccactgatttgatttcttctgtggtgctg |
321 |
Q |
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| T |
54601253 |
gtttattcatttctatggtatggagtatgggccactgatttgatttcttct-tggtgctg |
54601311 |
T |
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