View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3675-4-Insertion-1 (Length: 915)
Name: NF3675-4-Insertion-1
Description: NF3675-4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675-4-Insertion-1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 276 - 875
Target Start/End: Original strand, 51804983 - 51805579
Alignment:
| Q |
276 |
taatggtgtttaaacccagcccaaaacattttcctccttttcagactcaagaagattccttagcagagaatcaagctactaacaaagttaattaaaataa |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51804983 |
taatggtgtttaaacccagcccaaaacattttcctccttttcagactcaagaagattccttagcagagaatcaagctactaacaaagttaattaaaataa |
51805082 |
T |
|
| Q |
376 |
acagcgatccctaatccttacattactaatggtttacatgcaagtataagaagttactacgaattatgatactct-aataaaacccttatcatcatgtac |
474 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
51805083 |
acagagatccctaatccttacattactaatggtttacatgcaggcattagaagtcactacgaattatgatactctaaataaaacacttatcatcatgtac |
51805182 |
T |
|
| Q |
475 |
cccacaaagttaactttcatccctaatctttatgaatgtttgcagcattaccttcttcccattacagaatttgtgtgtcgattatttcttttgcgggaat |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
51805183 |
cccacaaagttaactttcatccctaatctttatgaatgttcgcagcattaccttcttcccattacagaatt--tgtgtcgattatttcttttgc-ggaat |
51805279 |
T |
|
| Q |
575 |
ctttaaacacttctaaatttcccccttcccctacagccagttcttttgcattacgaaacctgaaggattcttacttttttagtggcatgaatgaacatga |
674 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51805280 |
cttt-aacacttctaaatttctcccttcccctacagccagttcttttgcattaagaaacctgaaggattcttacttttttagtggcatgaatgaacatga |
51805378 |
T |
|
| Q |
675 |
acaaagatcttacgaaggtatatccttaatgaatcagatgtctccacaaaatcaacccctac-agaaaaaatggtgcaagtcatgttcaggccttgtact |
773 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51805379 |
acaaagatcttacgaaattatatccttaatgaatcagatgtctccaccaaatcaacccctacaagaaaaaatggtgcaagtcatgttcaggccttgtac- |
51805477 |
T |
|
| Q |
774 |
ttggttacaaaacaggatcatatcattcaccaatttgtaaattttgatag-ccaaatacctatctcactgctacaactggtaaattttaataactaataa |
872 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||||||| |||||||| | ||| |||||| |
|
|
| T |
51805478 |
ttggttacaaaacaggatcatatcattcaccaattt-taaattttgatagtcaaaataactatctcactgctacaacttgtaaatttaattaattaataa |
51805576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 51804761 - 51804988
Alignment:
| Q |
8 |
atccattcatccatagggaggactgaattataaaatttaatgaagggagattattgttatagttgaaaaaggatggaaagaaaagtaaatagaaagacta |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51804761 |
atccattcatccatagg----actgaattataaa-tttaatgaagggagattattgttatggttgaaaaaggatggaaagaaaagtaaatagaaagacta |
51804855 |
T |
|
| Q |
108 |
aagcaaatttagtacatgaaagttcttaagaaaatttcaaattgtattcagaccattcaaatatttaatattcaaatgtgaatcttttccaatcagttag |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51804856 |
aagcaaatttagtacatgaaagttctt-agaaaatttcaaattgtattcagaccattcaaatatttaatattcaaatgtgaatcttttccaatcagttag |
51804954 |
T |
|
| Q |
208 |
tttaagtaattggcatgcattaacatcaataatgg |
242 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
51804955 |
tttaaataattggcatgcatt-acatcaataatgg |
51804988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 51808713 - 51808772
Alignment:
| Q |
46 |
aatgaagggagattattgttatagttgaaaa-aggatggaaagaaaagtaaatagaaaga |
104 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | ||||||||| || ||||||||||||| |
|
|
| T |
51808713 |
aatgaagggagattattgttatggtagaaaagaagatggaaagcaatgtaaatagaaaga |
51808772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University