View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3675-4-Insertion-2 (Length: 899)

Name: NF3675-4-Insertion-2
Description: NF3675-4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3675-4-Insertion-2
NF3675-4-Insertion-2
[»] chr4 (16 HSPs)
chr4 (8-899)||(32333659-32334566)
chr4 (536-613)||(35609524-35609601)
chr4 (549-624)||(2220991-2221066)
chr4 (568-613)||(22231107-22231152)
chr4 (553-613)||(25323832-25323892)
chr4 (537-613)||(52559541-52559617)
chr4 (571-613)||(9685406-9685448)
chr4 (536-602)||(21041324-21041390)
chr4 (536-602)||(44118904-44118970)
chr4 (571-613)||(53814963-53815005)
chr4 (572-621)||(17222678-17222727)
chr4 (555-596)||(20726875-20726916)
chr4 (536-613)||(22827511-22827588)
chr4 (568-613)||(28245560-28245605)
chr4 (568-613)||(28246119-28246164)
chr4 (568-613)||(35796776-35796821)
[»] chr2 (20 HSPs)
chr2 (536-624)||(37812521-37812609)
chr2 (568-624)||(37812291-37812347)
chr2 (536-596)||(14927075-14927135)
chr2 (536-614)||(4662204-4662282)
chr2 (568-613)||(16533552-16533597)
chr2 (536-613)||(37840310-37840387)
chr2 (569-613)||(94054-94098)
chr2 (536-596)||(8227322-8227382)
chr2 (536-602)||(40149048-40149114)
chr2 (542-613)||(40149262-40149332)
chr2 (571-613)||(19191644-19191686)
chr2 (536-602)||(33606099-33606165)
chr2 (536-613)||(2029742-2029819)
chr2 (568-613)||(5851716-5851761)
chr2 (536-613)||(13210499-13210576)
chr2 (565-602)||(13237267-13237304)
chr2 (568-613)||(16419507-16419552)
chr2 (568-613)||(17525372-17525417)
chr2 (568-613)||(17719405-17719450)
chr2 (536-613)||(38629814-38629891)
[»] chr1 (7 HSPs)
chr1 (542-602)||(31181558-31181618)
chr1 (555-624)||(12376460-12376529)
chr1 (565-612)||(12325331-12325378)
chr1 (543-613)||(40079132-40079202)
chr1 (568-613)||(4113040-4113085)
chr1 (565-602)||(31004482-31004519)
chr1 (565-602)||(52907386-52907423)
[»] chr3 (12 HSPs)
chr3 (536-602)||(41915144-41915210)
chr3 (537-613)||(12930162-12930238)
chr3 (536-611)||(29575926-29576001)
chr3 (536-613)||(30179742-30179819)
chr3 (549-602)||(50930688-50930741)
chr3 (568-618)||(14991878-14991928)
chr3 (555-613)||(43781575-43781633)
chr3 (568-613)||(22729105-22729150)
chr3 (544-613)||(23610405-23610474)
chr3 (568-613)||(39269336-39269381)
chr3 (568-613)||(45138836-45138881)
chr3 (555-612)||(54368508-54368565)
[»] chr8 (20 HSPs)
chr8 (536-624)||(7729914-7730002)
chr8 (565-613)||(40014660-40014708)
chr8 (536-602)||(8466769-8466835)
chr8 (542-600)||(29005843-29005901)
chr8 (548-613)||(38447461-38447526)
chr8 (568-612)||(29907761-29907805)
chr8 (570-613)||(37001471-37001514)
chr8 (571-613)||(4828076-4828118)
chr8 (536-602)||(12688280-12688346)
chr8 (571-613)||(34842686-34842728)
chr8 (543-613)||(42049721-42049791)
chr8 (536-613)||(4873725-4873801)
chr8 (568-613)||(5590402-5590447)
chr8 (568-613)||(5931983-5932028)
chr8 (568-613)||(7669646-7669691)
chr8 (536-581)||(12022454-12022499)
chr8 (536-613)||(24532455-24532532)
chr8 (568-613)||(39052963-39053008)
chr8 (568-613)||(41790664-41790709)
chr8 (536-621)||(44931208-44931293)
[»] chr6 (17 HSPs)
chr6 (537-624)||(15102954-15103041)
chr6 (542-613)||(2736436-2736507)
chr6 (542-613)||(2737204-2737275)
chr6 (536-602)||(3823277-3823343)
chr6 (536-585)||(9601888-9601937)
chr6 (536-596)||(2736218-2736278)
chr6 (542-602)||(19639158-19639218)
chr6 (571-613)||(13740924-13740966)
chr6 (571-613)||(13746424-13746466)
chr6 (571-613)||(15600944-15600986)
chr6 (568-613)||(4868611-4868656)
chr6 (568-613)||(4868847-4868892)
chr6 (568-613)||(6400654-6400699)
chr6 (568-613)||(9705025-9705070)
chr6 (568-613)||(9705259-9705304)
chr6 (536-613)||(17147694-17147771)
chr6 (536-613)||(33494512-33494589)
[»] chr5 (12 HSPs)
chr5 (536-613)||(7369697-7369774)
chr5 (542-615)||(16707057-16707130)
chr5 (537-596)||(6413477-6413536)
chr5 (536-613)||(95300-95377)
chr5 (565-613)||(60089-60137)
chr5 (549-613)||(17352469-17352533)
chr5 (567-613)||(22925025-22925071)
chr5 (568-613)||(2063768-2063812)
chr5 (568-613)||(24528545-24528590)
chr5 (568-625)||(30770287-30770344)
chr5 (568-613)||(41666791-41666836)
chr5 (568-613)||(41667027-41667072)
[»] scaffold0692 (1 HSPs)
scaffold0692 (568-614)||(5577-5623)
[»] chr7 (13 HSPs)
chr7 (536-613)||(28080638-28080714)
chr7 (568-624)||(4454781-4454837)
chr7 (542-602)||(15317532-15317591)
chr7 (571-613)||(2544481-2544523)
chr7 (571-613)||(34027635-34027677)
chr7 (568-613)||(2401365-2401410)
chr7 (568-613)||(3038118-3038163)
chr7 (536-585)||(18826550-18826599)
chr7 (568-613)||(25620141-25620186)
chr7 (568-609)||(26239954-26239995)
chr7 (568-613)||(31892156-31892201)
chr7 (568-613)||(36277260-36277305)
chr7 (568-613)||(48243095-48243140)
[»] scaffold0129 (1 HSPs)
scaffold0129 (568-613)||(14308-14353)
[»] scaffold0083 (1 HSPs)
scaffold0083 (568-613)||(51241-51286)


Alignment Details
Target: chr4 (Bit Score: 707; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 8 - 899
Target Start/End: Complemental strand, 32334566 - 32333659
Alignment:
Q  8 ttatcaatgtcatgtatcaagtccctttcttttattatatgcacccgttgtattgtattattattattat---------actcttagctggttttagact 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||    
T  32334566 ttatcaatgtcatgtatcaagtccctttcttttattatatgcacccgttgtattgtattattattattattattattatactcttagctggttttagact 32334467  T
Q  99 ttatt--------aaatatgtagcacagacacttcaaattgaagatgtatttggtgttcgacacgagtaagtgtgtgacaccaatacaacatccacacac 190  Q
    |||||        || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  32334466 ttattggaccggtaattatgtagcacagacacttcaaattgaacatgtatttggtgttcgacacgagtaggtgtgtgacaccaatacgacatccacacac 32334367  T
Q  191 atatagttatattcaaatactctcttttaactaaattattaccagtataa----cgtgtcgt-gtcatagattagtactagtagttttgaggaaatgcat 285  Q
    |||| ||||||||||||||||     |||||||||||||||||| ||||     |||||| | |||||||||||||||||||||||||||||||||||||    
T  32334366 atatggttatattcaaatact-----ttaactaaattattaccattatacgtgccgtgtccttgtcatagattagtactagtagttttgaggaaatgcat 32334272  T
Q  286 acgaatttcaaagtgtttttgtggtaatgtaatgtcaatttaacctttattatgcaagtcatctcatgcatcagaaaggtttcataatgaaattgagcca 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32334271 acgaatttcaaagtgtttttgtggtaatgtaatgtcaatttaacctttattatgcaagtcatctcatgcatcagaaaggtttcataatgaaattgagcca 32334172  T
Q  386 ggttactctgaattacgtggaaaaggatgagaaactttaatcaaatgatattagttgtaataattgtttataataggataggatggaaactatggagtct 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32334171 ggttactctgaattacgtggaaaaggatgagaaactttaatcaaatgatattagttgtaataattgtttataataggataggatggaaactatggagtct 32334072  T
Q  486 attccttttcattttatttagtatttctatttttcgtcctcctaatttgggagtcgcacattggataagagatgacctcaacatgtgtttataagtgggg 585  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32334071 attccttttcattttatttagtatttctattttccgtcctcctaatttgggagtcgcacattggataagagatgacctgaacatgtgtttataagtgggg 32333972  T
Q  586 acaatcctcacttcacaggtcggttttgcaaggatgagtcc-aatataaaaacctaatgaatataactaacacactgtttattgattcagagccggtcta 684  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32333971 acaatcctcacttcacgggtcggttttgcaaggatgagtccaaatataaaaacctaatggatataactaacacactgtttattgattcagagccggtcta 32333872  T
Q  685 aggttaaggccattcaagtccttcctttaggtctctaaccctactcacaacacctcctacgaaacgcgtcaattttatgatttcacatccattttgacgc 784  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32333871 aggttaaggccattcaagtccttcctttaggtctctaatcctactcacaacacctcctacgcaacgcgtcaattttatgatttcacatccattttgacgc 32333772  T
Q  785 ataacagatattatgcatatgatttgtttatgaatccctttcccataannnnnnncactataagacttctcctagctttaggtctcaccttacttaaggt 884  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  32333771 ataaaagatattatgcatatgatttgtttatgaatccc-ttcccataa-ttttttcactataagacttctcctagctttaggtctcaccttacttaaggt 32333674  T
Q  885 cttctttggactaat 899  Q
    |||||||||||||||    
T  32333673 cttctttggactaat 32333659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 536 - 613
Target Start/End: Complemental strand, 35609601 - 35609524
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||||||||  |||||| ||| |||| |||||||||||||||| |||||||||| ||||| ||||||||||    
T  35609601 gagtcccacattggatgggagatggcctaaacaagtgtttataagtgggggcaatcctcacctcacaagtcggttttg 35609524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 549 - 624
Target Start/End: Complemental strand, 2221066 - 2220991
Alignment:
Q  549 gataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttgcaaggatgagt 624  Q
    ||||||||||| ||| || ||||||||||| |||||| |||||||||| ||||| | |||||||| ||||| ||||    
T  2221066 gataagagatggcctaaatatgtgtttataggtgggggcaatcctcacctcacaagccggttttgtaaggacgagt 2220991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 22231152 - 22231107
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||    
T  22231152 atgtgtttataagtggggacaatcctcacctcacaagccggttttg 22231107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 553 - 613
Target Start/End: Complemental strand, 25323892 - 25323832
Alignment:
Q  553 agagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||| |||| ||||||||| |||||| |||||||||| || |||| ||||||||    
T  25323892 agagatgacctgaacaagtgtttatacgtgggggcaatcctcacctcgcaggccggttttg 25323832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 537 - 613
Target Start/End: Original strand, 52559541 - 52559617
Alignment:
Q  537 agtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||| ||||||||||| || ||||||| |  |||||||||||||||||| ||||| |||| ||||| | ||||||||    
T  52559541 agtctcacattggatatgacatgacctgacaatgtgtttataagtgggggcaatcatcacctcacaagccggttttg 52559617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 613
Target Start/End: Original strand, 9685406 - 9685448
Alignment:
Q  571 tgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||    
T  9685406 tgtttataagtggggccaatcctcacctcacaagtcggttttg 9685448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 536 - 602
Target Start/End: Original strand, 21041324 - 21041390
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    ||||| ||||| ||| || ||||| ||  |||||||||||||||||||||| ||||||||| |||||    
T  21041324 gagtcccacatcggacaaaagatggccaaaacatgtgtttataagtggggaaaatcctcacctcaca 21041390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 536 - 602
Target Start/End: Complemental strand, 44118970 - 44118904
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    ||||| ||||| |||||||||||| ||| |  ||||||||||||||||||  ||||||||| |||||    
T  44118970 gagtcccacatcggataagagatggcctgacaatgtgtttataagtgggggtaatcctcacctcaca 44118904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 613
Target Start/End: Complemental strand, 53815005 - 53814963
Alignment:
Q  571 tgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||    
T  53815005 tgtttataagtgggggcaatcctcacctcacaagtcggttttg 53814963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 621
Target Start/End: Complemental strand, 17222727 - 17222678
Alignment:
Q  572 gtttataagtggggacaatcctcacttcacaggtcggttttgcaaggatg 621  Q
    |||||||||||||| |||||||||| ||||| | |||||||| |||||||    
T  17222727 gtttataagtgggggcaatcctcacctcacaagccggttttgtaaggatg 17222678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 596
Target Start/End: Complemental strand, 20726916 - 20726875
Alignment:
Q  555 agatgacctcaacatgtgtttataagtggggacaatcctcac 596  Q
    ||||||| | ||||||||||||||||||||| ||||||||||    
T  20726916 agatgacatgaacatgtgtttataagtgggggcaatcctcac 20726875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 613
Target Start/End: Original strand, 22827511 - 22827588
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||| ||||| |||||| ||| |  | |||||||||||||||| |||||||||| ||||| | ||||||||    
T  22827511 gagtcccacatcggataggagatggcctgacaacgtgtttataagtgggggcaatcctcacctcacaagccggttttg 22827588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 28245605 - 28245560
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  28245605 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 28245560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 28246164 - 28246119
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  28246164 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 28246119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 35796821 - 35796776
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  35796821 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 35796776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 536 - 624
Target Start/End: Complemental strand, 37812609 - 37812521
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttgcaaggatgagt 624  Q
    ||||| ||||| |||||||| ||||||| |  |||||||||||||||||| |||||||||| ||||| |||| ||||| ||||||||||    
T  37812609 gagtcccacatcggataagacatgacctgacaatgtgtttataagtgggggcaatcctcacctcacaagtcgattttgtaaggatgagt 37812521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 568 - 624
Target Start/End: Complemental strand, 37812347 - 37812291
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttgcaaggatgagt 624  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||    
T  37812347 atgtgtttataagtggggacaatcctcacctcacaagtcgattttgtaaggatgagt 37812291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 536 - 596
Target Start/End: Original strand, 14927075 - 14927135
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcac 596  Q
    ||||| ||||| |||||||||||||||| |  |||||||||||||||||| ||||||||||    
T  14927075 gagtcacacatcggataagagatgacctgacaatgtgtttataagtgggggcaatcctcac 14927135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 536 - 614
Target Start/End: Original strand, 4662204 - 4662282
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttgc 614  Q
    ||||| ||||| ||||| || ||||||| |  || ||||||||||||||| |||||||||| |||||||| ||||||||    
T  4662204 gagtcccacatcggataggacatgacctgacaatatgtttataagtgggggcaatcctcacctcacaggttggttttgc 4662282  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 16533552 - 16533597
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||||||||| | ||||||||    
T  16533552 atgtgtttataagtgggggcaatcctcacttcacaagccggttttg 16533597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 613
Target Start/End: Original strand, 37840310 - 37840387
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||||||||| |||||||||| |  |||||||||||||||| | ||||| |||| ||||| | ||||||||    
T  37840310 gagtcccacattggataggagatgacctgacaatgtgtttataagtggaggcaatcatcacctcacaagccggttttg 37840387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 569 - 613
Target Start/End: Complemental strand, 94098 - 94054
Alignment:
Q  569 tgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||||| |||||||||| ||||| ||||||||||    
T  94098 tgtgtttataagtgggggcaatcctcacctcacaagtcggttttg 94054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 536 - 596
Target Start/End: Original strand, 8227322 - 8227382
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcac 596  Q
    ||||| |||||||||| ||||||| | | |||| |||||||||||||||| ||||||||||    
T  8227322 gagtcacacattggatgagagatggcatgaacaagtgtttataagtgggggcaatcctcac 8227382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 602
Target Start/End: Complemental strand, 40149114 - 40149048
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaaca-tgtgtttataagtggggacaatcctcacttcaca 602  Q
    ||||| ||||| |||||  ||||||||| |||| |||||||||||||||||||||||||||| |||||    
T  40149114 gagtctcacatcggatagaagatgacct-aacagtgtgtttataagtggggacaatcctcacctcaca 40149048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 613
Target Start/End: Complemental strand, 40149332 - 40149262
Alignment:
Q  542 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||| |||||||||| |  |||||||||||||||||| |||| ||||| ||||| ||||||||||    
T  40149332 cacatcggatatgagatgacctaacaatgtgtttataagtgggg-caattctcacctcacaagtcggttttg 40149262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 613
Target Start/End: Complemental strand, 19191686 - 19191644
Alignment:
Q  571 tgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||||||||||| ||||| | ||||||||    
T  19191686 tgtttataagtggggacaatcctcacctcacaagccggttttg 19191644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 536 - 602
Target Start/End: Complemental strand, 33606165 - 33606099
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    ||||| ||||| ||||| |||||| ||| || |||||||||||||| ||| |||||||||| |||||    
T  33606165 gagtcccacatcggataggagatggcctgaaaatgtgtttataagtaggggcaatcctcacctcaca 33606099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 613
Target Start/End: Original strand, 2029742 - 2029819
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||| ||||| || ||||||| |  |||||||||||||||| | |||||||||| ||||| | ||||||||    
T  2029742 gagtcccacatcggataggacatgacctgacaatgtgtttataagtggaggcaatcctcacctcacaagccggttttg 2029819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 5851761 - 5851716
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||| |||||||||||||||||||||||| ||||| | ||||||||    
T  5851761 atgtatttataagtggggacaatcctcacctcacaagccggttttg 5851716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 613
Target Start/End: Original strand, 13210499 - 13210576
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||||| || ||||||| ||| |||   |||||||||| | || |||||||||| ||||||||||||||||    
T  13210499 gagtcccacattgaatgagagatggcctgaacgaatgtttataagagagggcaatcctcacctcacaggtcggttttg 13210576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 602
Target Start/End: Original strand, 13237267 - 13237304
Alignment:
Q  565 aacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  13237267 aacatgtgtttataggtggggataatcctcacttcaca 13237304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 16419507 - 16419552
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  16419507 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 16419552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 17525417 - 17525372
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  17525417 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 17525372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 17719405 - 17719450
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  17719405 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 17719450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 613
Target Start/End: Original strand, 38629814 - 38629891
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||| |||||||| ||||| | |  |||| ||||||||| |||||||||||||  ||||| ||||||||||    
T  38629814 gagtctcacatcggataagaaatgacatgacaatgtatttataagttgggacaatcctcatctcacaagtcggttttg 38629891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 542 - 602
Target Start/End: Complemental strand, 31181618 - 31181558
Alignment:
Q  542 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||    
T  31181618 cacattggataagagatggcctgaacatgtgtttataagtgggggcaatcctcacctcaca 31181558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 624
Target Start/End: Complemental strand, 12376529 - 12376460
Alignment:
Q  555 agatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttgcaaggatgagt 624  Q
    ||||||| | ||||||||||||||||||||| ||||| |||||||||| ||||||||||  |||||||||    
T  12376529 agatgacatgaacatgtgtttataagtgggggcaatcttcacttcacaagtcggttttgttaggatgagt 12376460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 565 - 612
Target Start/End: Complemental strand, 12325378 - 12325331
Alignment:
Q  565 aacatgtgtttataagtggggacaatcctcacttcacaggtcggtttt 612  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||    
T  12325378 aacatgtgtttataagtgggggcaatcttcacttcacaagtcggtttt 12325331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 543 - 613
Target Start/End: Original strand, 40079132 - 40079202
Alignment:
Q  543 acattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||| ||||| |||||||||| |  |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  40079132 acatcggataggagatgacctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttg 40079202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 4113085 - 4113040
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  4113085 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 4113040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 602
Target Start/End: Complemental strand, 31004519 - 31004482
Alignment:
Q  565 aacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  31004519 aacatgtgtttataagtgggggcaatcctcacctcaca 31004482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 602
Target Start/End: Original strand, 52907386 - 52907423
Alignment:
Q  565 aacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  52907386 aacatgtgtttataagtgggggcaatcctcacctcaca 52907423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 536 - 602
Target Start/End: Original strand, 41915144 - 41915210
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    ||||| ||||||||| |||||||||| | ||||||||||||||||||||| |||||||||| |||||    
T  41915144 gagtcccacattggaaaagagatgacatgaacatgtgtttataagtgggggcaatcctcacctcaca 41915210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 613
Target Start/End: Complemental strand, 12930238 - 12930162
Alignment:
Q  537 agtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||| ||||| |||||||||||||||| |  ||||||| ||| ||||||||||| ||||||||||| | ||||||||    
T  12930238 agtctcacatcggataagagatgacctgacaatgtgttcatatgtggggacaattctcacttcacaagccggttttg 12930162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 536 - 611
Target Start/End: Complemental strand, 29576001 - 29575926
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttt 611  Q
    ||||| ||||| |||||||||||||||| |  ||||||||||||||| |||||||  |||| ||||| ||||||||    
T  29576001 gagtctcacatcggataagagatgacctgagaatgtgtttataagtgaggacaattatcacatcacaagtcggttt 29575926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 613
Target Start/End: Complemental strand, 30179819 - 30179742
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| |||||  ||||||||||||||| |  ||||||||||||||||||  ||||||||| ||||| ||| ||||||    
T  30179819 gagtcccacatcagataagagatgacctgacaatgtgtttataagtgggggtaatcctcacctcacaagtcagttttg 30179742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 602
Target Start/End: Original strand, 50930688 - 50930741
Alignment:
Q  549 gataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    ||||| ||||| ||| ||||||||||||||||||||| |||||||||| |||||    
T  50930688 gataaaagatggccttaacatgtgtttataagtgggggcaatcctcacctcaca 50930741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 14991878 - 14991928
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttgcaagg 618  Q
    |||||||||||||||||| ||||||||||| |||| ||| |||||| ||||    
T  14991878 atgtgtttataagtgggggcaatcctcactccacaagtcagttttgtaagg 14991928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 555 - 613
Target Start/End: Original strand, 43781575 - 43781633
Alignment:
Q  555 agatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||| |  ||| |||||||||||| | |||||||||||||||| ||||||||||    
T  43781575 agatgacctgacaatgagtttataagtggaggcaatcctcacttcacaagtcggttttg 43781633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 22729105 - 22729150
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||| |||||||| |||||||||||||||| | ||||||||    
T  22729105 atgtgtttacaagtgggggcaatcctcacttcacaagccggttttg 22729150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 613
Target Start/End: Complemental strand, 23610474 - 23610405
Alignment:
Q  544 cattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||||  ||  ||| ||||||||||||||||  ||||||||  ||||||| ||||||||    
T  23610474 cattggataagagatggtctggacaagtgtttataagtgggggtaatcctcaactcacaggccggttttg 23610405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 39269336 - 39269381
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  39269336 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 39269381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 45138881 - 45138836
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  45138881 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 45138836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 612
Target Start/End: Original strand, 54368508 - 54368565
Alignment:
Q  555 agatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggtttt 612  Q
    ||||| ||| || |||||||||||||||||| |||||||||| ||||| | |||||||    
T  54368508 agatggcctgaaaatgtgtttataagtgggggcaatcctcacctcacaagccggtttt 54368565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 536 - 624
Target Start/End: Original strand, 7729914 - 7730002
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttgcaaggatgagt 624  Q
    ||||| |||||  |||| |||||| ||| | ||||||||||||||||||| |||||||||| ||||| | |||||||| ||||||||||    
T  7729914 gagtcccacatcagatatgagatggcctgaccatgtgtttataagtgggggcaatcctcacctcacaagccggttttgtaaggatgagt 7730002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 613
Target Start/End: Original strand, 40014660 - 40014708
Alignment:
Q  565 aacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  40014660 aacatgtgtttataagtgggggcaatcttcacttcacaagtcggttttg 40014708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 536 - 602
Target Start/End: Complemental strand, 8466835 - 8466769
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    ||||| ||||| |||||||||||| | | |||  ||||||||||||||||||||||||||| |||||    
T  8466835 gagtctcacatcggataagagatggcatgaacgagtgtttataagtggggacaatcctcacctcaca 8466769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 600
Target Start/End: Original strand, 29005843 - 29005901
Alignment:
Q  542 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttca 600  Q
    ||||||||||| |||||||||| |  || |||||||||||||| |||||||||||||||    
T  29005843 cacattggataggagatgacctgacaatatgtttataagtgggaacaatcctcacttca 29005901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 613
Target Start/End: Complemental strand, 38447526 - 38447461
Alignment:
Q  548 ggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||| ||| |  |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  38447526 ggataagagatggcctgacaatgtgtttataagtgggggcaatcctcacctcacaagccggttttg 38447461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 568 - 612
Target Start/End: Complemental strand, 29907805 - 29907761
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggtttt 612  Q
    |||||||||||||||||| |||||||||| ||||| |||||||||    
T  29907805 atgtgtttataagtggggtcaatcctcacctcacaagtcggtttt 29907761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 613
Target Start/End: Original strand, 37001471 - 37001514
Alignment:
Q  570 gtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||    
T  37001471 gtgtttataagtggggacaatcctcacatcacaagccggttttg 37001514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 613
Target Start/End: Original strand, 4828076 - 4828118
Alignment:
Q  571 tgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||||||||||| ||||| | ||||||||    
T  4828076 tgtttataagtggggacaatcctcacctcacaagccggttttg 4828118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 536 - 602
Target Start/End: Original strand, 12688280 - 12688346
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    ||||| |||||||||||  ||||||||| |  |||||||||||||||||| ||||||| || |||||    
T  12688280 gagtcccacattggatagaagatgacctgacaatgtgtttataagtgggggcaatccttacctcaca 12688346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 613
Target Start/End: Original strand, 34842686 - 34842728
Alignment:
Q  571 tgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||    
T  34842686 tgtttataagtgggggcaatcctcacctcataggtcggttttg 34842728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 543 - 613
Target Start/End: Complemental strand, 42049791 - 42049721
Alignment:
Q  543 acattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||| || ||||| |||  |||||||||||||||||||| ||||||||||  |||| | ||||||||    
T  42049791 acattggacaaaagatggcctggacatgtgtttataagtgggggcaatcctcaccccacaagccggttttg 42049721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 613
Target Start/End: Complemental strand, 4873801 - 4873725
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||| |||||| |||||||||||||||| |  ||||||||||||||| || |||| ||||| ||||| | ||||||||    
T  4873801 gagtggcacatcggataagagatgacctgacaatgtgtttataagtgtgg-caattctcacctcacaagccggttttg 4873725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 5590447 - 5590402
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||| |||||||| |||||||||||||||| | ||||||||    
T  5590447 atgtgtttacaagtgggggcaatcctcacttcacaagccggttttg 5590402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 5932028 - 5931983
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  5932028 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 5931983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 7669646 - 7669691
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| || |||||||    
T  7669646 atgtgtttataagtgggggcaatcctcacctcacaagttggttttg 7669691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 581
Target Start/End: Complemental strand, 12022499 - 12022454
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagt 581  Q
    ||||| ||||||||||||||| || |||||||| ||||||||||||    
T  12022499 gagtcccacattggataagaggtggcctcaacaagtgtttataagt 12022454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 613
Target Start/End: Complemental strand, 24532532 - 24532455
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||| ||||| |||||| ||| |  |||||||||||||||||| ||||| |||| ||||| | ||||||||    
T  24532532 gagtcccacatcggataggagatggcctgacaatgtgtttataagtgggggcaatcatcacctcacaagccggttttg 24532455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 39053008 - 39052963
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  39053008 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 39052963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 41790664 - 41790709
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||||||||||||||||| ||| | | ||||||||    
T  41790664 atgtgtttataagtggggacaatcctcacctcataagccggttttg 41790709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 621
Target Start/End: Complemental strand, 44931293 - 44931208
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttgcaaggatg 621  Q
    ||||| ||||| || | ||||||| ||| || | |||||||||||||||| |||||||| | ||||| | |||||||| |||||||    
T  44931293 gagtcccacatcggttgagagatggcctgaataagtgtttataagtgggggcaatcctcgcctcacaagccggttttgtaaggatg 44931208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 537 - 624
Target Start/End: Complemental strand, 15103041 - 15102954
Alignment:
Q  537 agtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttgcaaggatgagt 624  Q
    |||| ||||| ||||| | |||||||| |  ||||||||||||| |||| |||| ||||||||||||| |||||||| ||||||||||    
T  15103041 agtctcacatcggataggtgatgacctgacaatgtgtttataagcgggggcaattctcacttcacaggccggttttgtaaggatgagt 15102954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 542 - 613
Target Start/End: Complemental strand, 2736507 - 2736436
Alignment:
Q  542 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||| |||||||||| |  |||||||||||||||||| |||| ||||| ||||| ||||||||||    
T  2736507 cacatcggatatgagatgacctgataatgtgtttataagtgggggcaattctcacatcacaagtcggttttg 2736436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 542 - 613
Target Start/End: Complemental strand, 2737275 - 2737204
Alignment:
Q  542 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||| |||||||||| |  |||||||||||||||||| |||| ||||| ||||| ||||||||||    
T  2737275 cacatcggatatgagatgacctgataatgtgtttataagtgggggcaattctcacatcacaagtcggttttg 2737204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 536 - 602
Target Start/End: Original strand, 3823277 - 3823343
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    ||||| ||||| |||||||||||||||| |  || ||||||||||||||||||||| |||| |||||    
T  3823277 gagtctcacatcggataagagatgacctgataatttgtttataagtggggacaatcatcacatcaca 3823343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 585
Target Start/End: Complemental strand, 9601937 - 9601888
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtgggg 585  Q
    ||||| |||||||||| ||||||||||| |||||||||||| ||||||||    
T  9601937 gagtcccacattggatgagagatgacctgaacatgtgtttaaaagtgggg 9601888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 536 - 596
Target Start/End: Complemental strand, 2736278 - 2736218
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcac 596  Q
    ||||| ||||| || || |||||||||| |  |||||||||||||||||||||||||||||    
T  2736278 gagtcccacatcgggtaggagatgacctgacaatgtgtttataagtggggacaatcctcac 2736218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 542 - 602
Target Start/End: Complemental strand, 19639218 - 19639158
Alignment:
Q  542 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    ||||| |||||||| ||| ||| |  ||||||||||||||||||||||||||||| |||||    
T  19639218 cacataggataagatatggcctgacaatgtgtttataagtggggacaatcctcacctcaca 19639158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 613
Target Start/End: Original strand, 13740924 - 13740966
Alignment:
Q  571 tgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||  |||||||||||||||| ||||||||||    
T  13740924 tgtttataagtgggagcaatcctcacttcacaagtcggttttg 13740966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 613
Target Start/End: Original strand, 13746424 - 13746466
Alignment:
Q  571 tgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||  |||||||||||||||| ||||||||||    
T  13746424 tgtttataagtgggagcaatcctcacttcacaagtcggttttg 13746466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 613
Target Start/End: Original strand, 15600944 - 15600986
Alignment:
Q  571 tgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||| |||||||||||||||| ||| ||||||    
T  15600944 tgtttataagtgggggcaatcctcacttcacaagtcagttttg 15600986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 4868656 - 4868611
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  4868656 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 4868611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 4868892 - 4868847
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  4868892 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 4868847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 6400699 - 6400654
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||| | |||||||||| ||||| ||||||||||    
T  6400699 atgtgtttataagtggaggcaatcctcacatcacaagtcggttttg 6400654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 9705025 - 9705070
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| ||||| |||| ||||| ||||||||||    
T  9705025 atgtgtttataagtgggggcaatcatcacctcacaagtcggttttg 9705070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 9705259 - 9705304
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  9705259 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 9705304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 613
Target Start/End: Complemental strand, 17147771 - 17147694
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||| ||||| || ||||||| |  |||| ||||||||||||| |||||||||| ||||| | ||||||||    
T  17147771 gagtcccacatcggataggacatgacctgacaatgtatttataagtgggggcaatcctcacctcacaagccggttttg 17147694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 613
Target Start/End: Original strand, 33494512 - 33494589
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||| ||||| |||||| | | || || ||||||||||||||| |||||||||| ||||| | ||||||||    
T  33494512 gagtcccacatcggataggagatggcttgaaaatatgtttataagtgggggcaatcctcacctcacaagccggttttg 33494589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 536 - 613
Target Start/End: Original strand, 7369697 - 7369774
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| |||||||||||||||||| | | |||| |||||||||||||||| || ||||||| ||||| | ||||||||    
T  7369697 gagtcccacattggataagagatggcatgaacaagtgtttataagtgggggcagtcctcacctcacaagccggttttg 7369774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 542 - 615
Target Start/End: Complemental strand, 16707130 - 16707057
Alignment:
Q  542 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttgca 615  Q
    |||||||||||| | ||||||| ||||||||||||||||||||| ||||||| || ||||| |  |||||||||    
T  16707130 cacattggataaaatatgacctgaacatgtgtttataagtgggggcaatcctaacctcacaagctggttttgca 16707057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 537 - 596
Target Start/End: Complemental strand, 6413536 - 6413477
Alignment:
Q  537 agtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcac 596  Q
    |||| ||||||||||| |||||||||| |  |||||||||||||||||| ||||||||||    
T  6413536 agtctcacattggatatgagatgacctgacaatgtgtttataagtgggggcaatcctcac 6413477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 613
Target Start/End: Complemental strand, 95377 - 95300
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||| ||||| | |||||||| |  ||||||||||||||||||||||||||||  ||||| | ||||||||    
T  95377 gagtcacacatcggataggtgatgacctgacaatgtgtttataagtggggacaatcctcatctcacaagccggttttg 95300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 565 - 613
Target Start/End: Original strand, 60089 - 60137
Alignment:
Q  565 aacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||||||||| |||||||||| ||||| | ||||||||    
T  60089 aacatgtgtttataagtgggggcaatcctcacctcacaagccggttttg 60137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 549 - 613
Target Start/End: Complemental strand, 17352533 - 17352469
Alignment:
Q  549 gataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||| |  |||||||||||||||||| ||||| |||| ||||| | ||||||||    
T  17352533 gataagagatgacctgacaatgtgtttataagtgggggcaatcatcacctcacaagccggttttg 17352469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 567 - 613
Target Start/End: Original strand, 22925025 - 22925071
Alignment:
Q  567 catgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||| |||||||||||||||||||| | || |||||||    
T  22925025 catgtgtttataaatggggacaatcctcacttcataagttggttttg 22925071  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 2063812 - 2063768
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| ||||||||||    
T  2063812 atgtgtttataagtgggggcaatcctcac-tcacaagtcggttttg 2063768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 24528545 - 24528590
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  24528545 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 24528590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 625
Target Start/End: Complemental strand, 30770344 - 30770287
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttgcaaggatgagtc 625  Q
    |||||||||||||||||| |||||||||| ||| | |  ||||||| |||||||||||    
T  30770344 atgtgtttataagtgggggcaatcctcacctcataagctggttttgtaaggatgagtc 30770287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 41666836 - 41666791
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  41666836 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 41666791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 41667072 - 41667027
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  41667072 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 41667027  T

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Target: scaffold0692 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 568 - 614
Target Start/End: Complemental strand, 5623 - 5577
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttgc 614  Q
    |||||||||||||||||| |||||||||||||||| | |||||||||    
T  5623 atgtgtttataagtgggggcaatcctcacttcacaagccggttttgc 5577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 613
Target Start/End: Original strand, 28080638 - 28080714
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||| ||||| |||||||||||||||| |  |||||||||||||| ||| ||||  |||||||||| ||||||||||    
T  28080638 gagtctcacatcggataagagatgacctgacaatgtgtttataagtaggg-caattttcacttcacaagtcggttttg 28080714  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 568 - 624
Target Start/End: Original strand, 4454781 - 4454837
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttgcaaggatgagt 624  Q
    |||||||||||||||||| |||||||||| |||||   |||||||| ||||||||||    
T  4454781 atgtgtttataagtgggggcaatcctcacctcacaaaccggttttgtaaggatgagt 4454837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 542 - 602
Target Start/End: Original strand, 15317532 - 15317591
Alignment:
Q  542 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 602  Q
    |||||||||||| ||||| ||| | ||||||||||||||||||| |||||||||| |||||    
T  15317532 cacattggataaaagatggcctga-catgtgtttataagtgggggcaatcctcacctcaca 15317591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 613
Target Start/End: Complemental strand, 2544523 - 2544481
Alignment:
Q  571 tgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||    
T  2544523 tgtttataagtgggggcaatcctcacctcacaagtcggttttg 2544481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 613
Target Start/End: Original strand, 34027635 - 34027677
Alignment:
Q  571 tgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||| |||||||||||||||| | ||||||||    
T  34027635 tgtttataagtgggggcaatcctcacttcacaagccggttttg 34027677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 2401365 - 2401410
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    ||||||||||||||| |||||||| |||||||||| |||| |||||    
T  2401365 atgtgtttataagtgtggacaatcttcacttcacaagtcgattttg 2401410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 3038163 - 3038118
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  3038163 atgtgtttataagtgggggcaatcctcacgtcacaagccggttttg 3038118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 585
Target Start/End: Complemental strand, 18826599 - 18826550
Alignment:
Q  536 gagtcgcacattggataagagatgacctcaacatgtgtttataagtgggg 585  Q
    ||||| ||||||||||| |||||||||| |  ||||||||||||||||||    
T  18826599 gagtcccacattggataggagatgacctgacaatgtgtttataagtgggg 18826550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 25620141 - 25620186
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  25620141 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 25620186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 609
Target Start/End: Complemental strand, 26239995 - 26239954
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggt 609  Q
    |||||||||||||||||| |||||||||| ||||| ||||||    
T  26239995 atgtgtttataagtgggggcaatcctcacctcacaagtcggt 26239954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 31892156 - 31892201
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||| |||||||||||||||||||||||| ||||| | ||||||||    
T  31892156 atgtatttataagtggggacaatcctcacctcacaagccggttttg 31892201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 36277305 - 36277260
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| |||| |||||    
T  36277305 atgtgtttataagtgggggcaatcctcacctcacaagtcgattttg 36277260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Complemental strand, 48243140 - 48243095
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||    
T  48243140 atgtgtttataagtgggggcaatcctcacctcacaagccggttttg 48243095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 14308 - 14353
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||||||||| |||| ||||| | ||||||||    
T  14308 atgtgtttataagtggggacaatcatcacctcacaagccggttttg 14353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 613
Target Start/End: Original strand, 51241 - 51286
Alignment:
Q  568 atgtgtttataagtggggacaatcctcacttcacaggtcggttttg 613  Q
    |||||||||||||||||| |||||||||| ||||| ||| ||||||    
T  51241 atgtgtttataagtgggggcaatcctcacctcacaagtcagttttg 51286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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