View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675-4-Insertion-4 (Length: 788)
Name: NF3675-4-Insertion-4
Description: NF3675-4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675-4-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 494
Target Start/End: Complemental strand, 48754667 - 48754210
Alignment:
| Q |
15 |
aaccacaatcagagagataacacaccacaataaacaaatacaaaatgaaatcgagtcaaaatctcgtcagtcccagctgaaatcctgcagctctcaaatt |
114 |
Q |
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| T |
48754667 |
aaccacaatcagagagacaacacaccacaataaacaaataaaaaatgaaatcgagtcaaaatctcgtcagtcccagctgaaatcctgcagctctcaaatt |
48754568 |
T |
|
| Q |
115 |
tgtacggctagaacaaaatatcccaccctctatttattccttcagggtttcaataagggttacccagcaaattcagatacacaggtattgcaatgaaaat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48754567 |
tgtacggctagaacaaaatatcccaccctctatttattccttcagggtttcaataagggttacccagcaaattcagatacacaggtattgcaatgtaaat |
48754468 |
T |
|
| Q |
215 |
ctggattaagtttggccaaattaagtaacattgattcacaactacgcaatcatagatccaatccacattaaacaatattttgctaaagcaaggatatcaa |
314 |
Q |
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| T |
48754467 |
ctggattaagtttggccaaattaagtaacattgattcacaactacgcaatcatagatccaatccacattaaacaatattttgctaaagcaaggatatcaa |
48754368 |
T |
|
| Q |
315 |
ttgcagtcgtgttgtaattaaagtcacgcaaaaagagcggtcaagatcgggtcacaataatcaatgtcactgtcacaatcatcatatgtagttaatacaa |
414 |
Q |
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| T |
48754367 |
ttgcagtcgtgttgtaat----------------------tcaagatcgggtcacaataatcaatgtcaatgtcacaatcatcatatgtagttaatacaa |
48754290 |
T |
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| Q |
415 |
acaagagaatcataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaaaccttaacc |
494 |
Q |
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| T |
48754289 |
acaagagaatcataattcaaatttctgctagagcaacctaacaaagccttatcataaatatgaactgtcaaaacttaacc |
48754210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 49053265 - 49053124
Alignment:
| Q |
93 |
gaaatcctgcagctctcaaatttgtacggctagaacaaaatatccc-accctctatttattccttcagggtttcaataagggttacccagcaaattcaga |
191 |
Q |
| |
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|||| ||||||| |||| ||||||||| |||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||| |||| ||||| |
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| T |
49053265 |
gaaaccctgcaggtctcgaatttgtacagctagaacaaaatatccccaccctctattttttccttcagagtctcaataagggttacccaacaaactcaga |
49053166 |
T |
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| Q |
192 |
tacacaggtattgcaatgaaaatctggattaagtttggccaa |
233 |
Q |
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| T |
49053165 |
tacacaggtattgcaatcaatttctgaatcaagtttggccaa |
49053124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 607 - 756
Target Start/End: Complemental strand, 48754098 - 48753956
Alignment:
| Q |
607 |
gttcatcctatggctaatacccttggcacattgacattgttgttttaactttggcaatgggttgtgcaatgacnnnnnnngacagcttcagcatatgtct |
706 |
Q |
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| T |
48754098 |
gttcatcctatg-ctaatacccttggcacattgccattgttgttttaactt--gcaatgggttgtgcaatgac-ttttttgacagcttcagcatatgtct |
48754003 |
T |
|
| Q |
707 |
tggtgctggatagggtaagtgtggaattccagcaggtcttcaagtgaagt |
756 |
Q |
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| T |
48754002 |
ttgtgct-gata-ggtaagtgtgg-attcaagcaggtcttcaagtgaagt |
48753956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 295 - 415
Target Start/End: Complemental strand, 49053051 - 49052934
Alignment:
| Q |
295 |
tgctaaagcaaggatatcaattgcagtcgtgttgtaattaaagtcacgcaaaaagagcggtcaagatcgggtcacaataatcaatgtcactgtcacaatc |
394 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||| |||||| |||||||||| || || ||||||||||||||||||||| |||||||||| |
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| T |
49053051 |
tgctaaagcaaggatttcaattgcagtcgcgttgtaattaaattcacgc-aaaagagcggcca--atagggtcacaataatcaatgtcaatgtcacaatc |
49052955 |
T |
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| Q |
395 |
atcatatgtagttaatacaaa |
415 |
Q |
| |
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| T |
49052954 |
attatatgcagtaaatgcaaa |
49052934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 412 - 485
Target Start/End: Complemental strand, 35914421 - 35914347
Alignment:
| Q |
412 |
caaacaagagaat-cataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaa |
485 |
Q |
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||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||| | ||||||||| |
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| T |
35914421 |
caaacgagagaattcataattcaaatatctgctagagcaacctaacaaagctttataagaaatgttaactgtcaa |
35914347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 29031700 - 29031626
Alignment:
| Q |
85 |
tcccagctgaaatcctgcagctctcaaatttgtacggctagaacaaaatatcccaccctctatttattccttcag |
159 |
Q |
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|||||| ||||| ||| |||||||| |||||| || |||||||||||||||| |||||||| || ||||||||| |
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| T |
29031700 |
tcccagatgaaaccctacagctctcgaatttggactgctagaacaaaatatctcaccctcttttctttccttcag |
29031626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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