View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3675-4-Insertion-5 (Length: 670)
Name: NF3675-4-Insertion-5
Description: NF3675-4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675-4-Insertion-5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 77 - 392
Target Start/End: Complemental strand, 11247645 - 11247333
Alignment:
| Q |
77 |
acaaaaagacgatacacactccgcaccgaataatgcccattcttctcgggtt-ccacactaataatctatttgtattctttactttttgtctttacaaac |
175 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
11247645 |
acaaaaagaccatatacactccgcaccgaataatgcccattcttctcgggtttccacactaat---ctatttgtattctttagtttttgtctttaaaaac |
11247549 |
T |
|
| Q |
176 |
agaaatttatataaacannnnnnnaaatcttaagagatgtatcaatcttgtggtcgaagttcaccgttttgaataataacaataataataattctttttg |
275 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
11247548 |
agaaatttatataaacatttttt-aaatcttaagagatgaatcaatcttgtgttcgaagttcaccattttgaataataacaataataatgattctttttg |
11247450 |
T |
|
| Q |
276 |
gaaataaagagtgtcagatgctgaagaagcactaaacaacgtctagactagagatggcaactcccaacagatcaaccaaatgcaaagaaataaattgagc |
375 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11247449 |
gaaataaagagtgtcagatgctgaagaatgactaaacaacaattagtctagagatggcaactcccaacaaatcaaccaaatgcaaagaaataaattgagc |
11247350 |
T |
|
| Q |
376 |
atgacaatgctcataaa |
392 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11247349 |
atgacaatgctcataaa |
11247333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 29206623 - 29206511
Alignment:
| Q |
11 |
ttcaacctcaaagttccactccaataaccattctttcataggtggttattatccacaatatcttcgacaaaaagacgatacacactccgcaccgaataat |
110 |
Q |
| |
|
|||||| || || ||||||||||||||||| || ||| ||||| |||||| ||||||||||| |||| ||||||||||| |||| | |||||||||| |
|
|
| T |
29206623 |
ttcaacttccaaattccactccaataaccactccttctcaggtgtgtattattcacaatatctttgacacaaagacgatacgcacttggtaccgaataat |
29206524 |
T |
|
| Q |
111 |
gcccattcttctc |
123 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29206523 |
gcccattcttctc |
29206511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University