View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3675-4.16-Insertion-2 (Length: 816)

Name: NF3675-4.16-Insertion-2
Description: NF3675-4-16
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3675-4.16-Insertion-2
NF3675-4.16-Insertion-2
[»] chr4 (8 HSPs)
chr4 (8-816)||(32333748-32334566)
chr4 (537-603)||(35609535-35609601)
chr4 (537-603)||(21041324-21041390)
chr4 (569-603)||(22231118-22231152)
chr4 (537-603)||(44118904-44118970)
chr4 (550-603)||(2221013-2221066)
chr4 (556-597)||(20726875-20726916)
chr4 (538-603)||(52559541-52559606)
[»] chr1 (6 HSPs)
chr1 (543-603)||(31181558-31181618)
chr1 (556-626)||(12376460-12376529)
chr1 (544-603)||(40079132-40079191)
chr1 (566-603)||(12325341-12325378)
chr1 (566-603)||(31004482-31004519)
chr1 (566-603)||(52907386-52907423)
[»] chr3 (5 HSPs)
chr3 (537-603)||(41915144-41915210)
chr3 (538-603)||(12930173-12930238)
chr3 (550-603)||(50930688-50930741)
chr3 (537-591)||(29575947-29576001)
chr3 (537-603)||(30179753-30179819)
[»] chr2 (9 HSPs)
chr2 (537-626)||(37812521-37812609)
chr2 (537-597)||(14927075-14927135)
chr2 (569-626)||(37812291-37812347)
chr2 (537-597)||(8227322-8227382)
chr2 (537-603)||(40149048-40149114)
chr2 (569-603)||(16533552-16533586)
chr2 (537-603)||(33606099-33606165)
chr2 (537-603)||(37840310-37840376)
chr2 (566-603)||(13237267-13237304)
[»] chr5 (7 HSPs)
chr5 (543-603)||(16707070-16707130)
chr5 (538-597)||(6413477-6413536)
chr5 (537-603)||(7369697-7369763)
chr5 (537-596)||(95318-95377)
chr5 (566-603)||(60089-60126)
chr5 (550-603)||(17352480-17352533)
chr5 (568-601)||(22925025-22925058)
[»] chr8 (8 HSPs)
chr8 (537-603)||(8466769-8466835)
chr8 (543-601)||(29005843-29005901)
chr8 (537-626)||(7729914-7730002)
chr8 (537-603)||(12688280-12688346)
chr8 (549-603)||(38447472-38447526)
chr8 (537-582)||(12022454-12022499)
chr8 (566-603)||(40014660-40014697)
chr8 (544-597)||(42049738-42049791)
[»] chr6 (5 HSPs)
chr6 (537-603)||(3823277-3823343)
chr6 (537-586)||(9601888-9601937)
chr6 (537-597)||(2736218-2736278)
chr6 (538-626)||(15102954-15103041)
chr6 (543-603)||(19639158-19639218)
[»] chr7 (2 HSPs)
chr7 (543-603)||(15317532-15317591)
chr7 (537-586)||(18826550-18826599)
[»] scaffold0692 (1 HSPs)
scaffold0692 (569-603)||(5589-5623)


Alignment Details
Target: chr4 (Bit Score: 598; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 816
Target Start/End: Complemental strand, 32334566 - 32333748
Alignment:
Q  8 ttatcaatgtcatgtatcaagtccctttcttttattatatgcacccgttgtattgtattattattattat---------actcttagctggttttagact 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||    
T  32334566 ttatcaatgtcatgtatcaagtccctttcttttattatatgcacccgttgtattgtattattattattattattattatactcttagctggttttagact 32334467  T
Q  99 ttatt--------aaatatgtagcacagacacttcaaattgaagatgtatttggtgttcgacacgagtaagtgtgtgacaccaatacaacatccacacac 190  Q
    |||||        || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  32334466 ttattggaccggtaattatgtagcacagacacttcaaattgaacatgtatttggtgttcgacacgagtaggtgtgtgacaccaatacgacatccacacac 32334367  T
Q  191 atatagttatattcaaatactctcttttaactaaattattaccagtataa----cgtgtcgt-gtcatagattagtactagtagttttgaggaaatgcat 285  Q
    |||| ||||||||||||||||     |||||||||||||||||| ||||     |||||| | |||||||||||||||||||||||||||||||||||||    
T  32334366 atatggttatattcaaatact-----ttaactaaattattaccattatacgtgccgtgtccttgtcatagattagtactagtagttttgaggaaatgcat 32334272  T
Q  286 acgaatttcaaagtgtttttgtggtaatgtaatgtcaatttaacctttattatgcaagtcatctcatgcatcagaaaggtttcataatgaaattgagcca 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32334271 acgaatttcaaagtgtttttgtggtaatgtaatgtcaatttaacctttattatgcaagtcatctcatgcatcagaaaggtttcataatgaaattgagcca 32334172  T
Q  386 ggttactctgaattacgtggaaaaggatgagaaactttaatcaaatgatattagttgtaataattgtttataataggataggatggaaactatggagtct 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32334171 ggttactctgaattacgtggaaaaggatgagaaactttaatcaaatgatattagttgtaataattgtttataataggataggatggaaactatggagtct 32334072  T
Q  486 attccttttcattttatttagtatttctatttttcgtcctcctaatttggggagtcgcacattggataagagatgacctcaacatgtgtttataagtggg 585  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32334071 attccttttcattttatttagtatttctattttccgtcctcctaattt-gggagtcgcacattggataagagatgacctgaacatgtgtttataagtggg 32333973  T
Q  586 gacaatcctcacttcacagggtcggttttgcaaggatgagtcc-aatataaaaacctaatgaatataactaacacactgtttattgatttcagagccggg 684  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||    
T  32333972 gacaatcctcacttcac-gggtcggttttgcaaggatgagtccaaatataaaaacctaatggatataactaacacactgtttattga-ttcagagcc-gg 32333876  T
Q  685 tctaaggttaaggccatttcaagtccttcctttaggtctctaaccctactcacaacacctcctacgaaacgcggtcaattttatgatttcacatcccatt 784  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  32333875 tctaaggttaaggcca-ttcaagtccttcctttaggtctctaatcctactcacaacacctcctacgcaacgc-gtcaattttatgatttcacat-ccatt 32333779  T
Q  785 ttgacgcataacagatattaatgcatatgatt 816  Q
    ||||||||||| ||||||| ||||||||||||    
T  32333778 ttgacgcataaaagatatt-atgcatatgatt 32333748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 603
Target Start/End: Complemental strand, 35609601 - 35609535
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| ||||||||||  |||||| ||| |||| |||||||||||||||| |||||||||| |||||    
T  35609601 gagtcccacattggatgggagatggcctaaacaagtgtttataagtgggggcaatcctcacctcaca 35609535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 603
Target Start/End: Original strand, 21041324 - 21041390
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| ||||| ||| || ||||| ||  |||||||||||||||||||||| ||||||||| |||||    
T  21041324 gagtcccacatcggacaaaagatggccaaaacatgtgtttataagtggggaaaatcctcacctcaca 21041390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 603
Target Start/End: Complemental strand, 22231152 - 22231118
Alignment:
Q  569 atgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||||||||||||||||||||||||||| |||||    
T  22231152 atgtgtttataagtggggacaatcctcacctcaca 22231118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 603
Target Start/End: Complemental strand, 44118970 - 44118904
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| ||||| |||||||||||| ||| |  ||||||||||||||||||  ||||||||| |||||    
T  44118970 gagtcccacatcggataagagatggcctgacaatgtgtttataagtgggggtaatcctcacctcaca 44118904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 603
Target Start/End: Complemental strand, 2221066 - 2221013
Alignment:
Q  550 gataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||||||||| ||| || ||||||||||| |||||| |||||||||| |||||    
T  2221066 gataagagatggcctaaatatgtgtttataggtgggggcaatcctcacctcaca 2221013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 597
Target Start/End: Complemental strand, 20726916 - 20726875
Alignment:
Q  556 agatgacctcaacatgtgtttataagtggggacaatcctcac 597  Q
    ||||||| | ||||||||||||||||||||| ||||||||||    
T  20726916 agatgacatgaacatgtgtttataagtgggggcaatcctcac 20726875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 603
Target Start/End: Original strand, 52559541 - 52559606
Alignment:
Q  538 agtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    |||| ||||||||||| || ||||||| |  |||||||||||||||||| ||||| |||| |||||    
T  52559541 agtctcacattggatatgacatgacctgacaatgtgtttataagtgggggcaatcatcacctcaca 52559606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 543 - 603
Target Start/End: Complemental strand, 31181618 - 31181558
Alignment:
Q  543 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||    
T  31181618 cacattggataagagatggcctgaacatgtgtttataagtgggggcaatcctcacctcaca 31181558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 626
Target Start/End: Complemental strand, 12376529 - 12376460
Alignment:
Q  556 agatgacctcaacatgtgtttataagtggggacaatcctcacttcacagggtcggttttgcaaggatgagt 626  Q
    ||||||| | ||||||||||||||||||||| ||||| ||||||||||  ||||||||||  |||||||||    
T  12376529 agatgacatgaacatgtgtttataagtgggggcaatcttcacttcaca-agtcggttttgttaggatgagt 12376460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 603
Target Start/End: Original strand, 40079132 - 40079191
Alignment:
Q  544 acattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    |||| ||||| |||||||||| |  |||||||||||||||||| |||||||||| |||||    
T  40079132 acatcggataggagatgacctgacaatgtgtttataagtgggggcaatcctcacctcaca 40079191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 603
Target Start/End: Complemental strand, 12325378 - 12325341
Alignment:
Q  566 aacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  12325378 aacatgtgtttataagtgggggcaatcttcacttcaca 12325341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 603
Target Start/End: Complemental strand, 31004519 - 31004482
Alignment:
Q  566 aacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  31004519 aacatgtgtttataagtgggggcaatcctcacctcaca 31004482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 603
Target Start/End: Original strand, 52907386 - 52907423
Alignment:
Q  566 aacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  52907386 aacatgtgtttataagtgggggcaatcctcacctcaca 52907423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 537 - 603
Target Start/End: Original strand, 41915144 - 41915210
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| ||||||||| |||||||||| | ||||||||||||||||||||| |||||||||| |||||    
T  41915144 gagtcccacattggaaaagagatgacatgaacatgtgtttataagtgggggcaatcctcacctcaca 41915210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 538 - 603
Target Start/End: Complemental strand, 12930238 - 12930173
Alignment:
Q  538 agtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    |||| ||||| |||||||||||||||| |  ||||||| ||| ||||||||||| |||||||||||    
T  12930238 agtctcacatcggataagagatgacctgacaatgtgttcatatgtggggacaattctcacttcaca 12930173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 603
Target Start/End: Original strand, 50930688 - 50930741
Alignment:
Q  550 gataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| ||||| ||| ||||||||||||||||||||| |||||||||| |||||    
T  50930688 gataaaagatggccttaacatgtgtttataagtgggggcaatcctcacctcaca 50930741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 591
Target Start/End: Complemental strand, 29576001 - 29575947
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaat 591  Q
    ||||| ||||| |||||||||||||||| |  ||||||||||||||| |||||||    
T  29576001 gagtctcacatcggataagagatgacctgagaatgtgtttataagtgaggacaat 29575947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 603
Target Start/End: Complemental strand, 30179819 - 30179753
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| |||||  ||||||||||||||| |  ||||||||||||||||||  ||||||||| |||||    
T  30179819 gagtcccacatcagataagagatgacctgacaatgtgtttataagtgggggtaatcctcacctcaca 30179753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 537 - 626
Target Start/End: Complemental strand, 37812609 - 37812521
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacagggtcggttttgcaaggatgagt 626  Q
    ||||| ||||| |||||||| ||||||| |  |||||||||||||||||| |||||||||| |||||  |||| ||||| ||||||||||    
T  37812609 gagtcccacatcggataagacatgacctgacaatgtgtttataagtgggggcaatcctcacctcaca-agtcgattttgtaaggatgagt 37812521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 14927075 - 14927135
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcac 597  Q
    ||||| ||||| |||||||||||||||| |  |||||||||||||||||| ||||||||||    
T  14927075 gagtcacacatcggataagagatgacctgacaatgtgtttataagtgggggcaatcctcac 14927135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 626
Target Start/End: Complemental strand, 37812347 - 37812291
Alignment:
Q  569 atgtgtttataagtggggacaatcctcacttcacagggtcggttttgcaaggatgagt 626  Q
    ||||||||||||||||||||||||||||| |||||  |||| ||||| ||||||||||    
T  37812347 atgtgtttataagtggggacaatcctcacctcaca-agtcgattttgtaaggatgagt 37812291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 8227322 - 8227382
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcac 597  Q
    ||||| |||||||||| ||||||| | | |||| |||||||||||||||| ||||||||||    
T  8227322 gagtcacacattggatgagagatggcatgaacaagtgtttataagtgggggcaatcctcac 8227382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 603
Target Start/End: Complemental strand, 40149114 - 40149048
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaaca-tgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| ||||| |||||  ||||||||| |||| |||||||||||||||||||||||||||| |||||    
T  40149114 gagtctcacatcggatagaagatgacct-aacagtgtgtttataagtggggacaatcctcacctcaca 40149048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 603
Target Start/End: Original strand, 16533552 - 16533586
Alignment:
Q  569 atgtgtttataagtggggacaatcctcacttcaca 603  Q
    |||||||||||||||||| ||||||||||||||||    
T  16533552 atgtgtttataagtgggggcaatcctcacttcaca 16533586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 603
Target Start/End: Complemental strand, 33606165 - 33606099
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| ||||| ||||| |||||| ||| || |||||||||||||| ||| |||||||||| |||||    
T  33606165 gagtcccacatcggataggagatggcctgaaaatgtgtttataagtaggggcaatcctcacctcaca 33606099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 603
Target Start/End: Original strand, 37840310 - 37840376
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| ||||||||||| |||||||||| |  |||||||||||||||| | ||||| |||| |||||    
T  37840310 gagtcccacattggataggagatgacctgacaatgtgtttataagtggaggcaatcatcacctcaca 37840376  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 603
Target Start/End: Original strand, 13237267 - 13237304
Alignment:
Q  566 aacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  13237267 aacatgtgtttataggtggggataatcctcacttcaca 13237304  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 603
Target Start/End: Complemental strand, 16707130 - 16707070
Alignment:
Q  543 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    |||||||||||| | ||||||| ||||||||||||||||||||| ||||||| || |||||    
T  16707130 cacattggataaaatatgacctgaacatgtgtttataagtgggggcaatcctaacctcaca 16707070  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 538 - 597
Target Start/End: Complemental strand, 6413536 - 6413477
Alignment:
Q  538 agtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcac 597  Q
    |||| ||||||||||| |||||||||| |  |||||||||||||||||| ||||||||||    
T  6413536 agtctcacattggatatgagatgacctgacaatgtgtttataagtgggggcaatcctcac 6413477  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 603
Target Start/End: Original strand, 7369697 - 7369763
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| |||||||||||||||||| | | |||| |||||||||||||||| || ||||||| |||||    
T  7369697 gagtcccacattggataagagatggcatgaacaagtgtttataagtgggggcagtcctcacctcaca 7369763  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 596
Target Start/End: Complemental strand, 95377 - 95318
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctca 596  Q
    ||||| ||||| ||||| | |||||||| |  ||||||||||||||||||||||||||||    
T  95377 gagtcacacatcggataggtgatgacctgacaatgtgtttataagtggggacaatcctca 95318  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 603
Target Start/End: Original strand, 60089 - 60126
Alignment:
Q  566 aacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  60089 aacatgtgtttataagtgggggcaatcctcacctcaca 60126  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 603
Target Start/End: Complemental strand, 17352533 - 17352480
Alignment:
Q  550 gataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||||||||||||| |  |||||||||||||||||| ||||| |||| |||||    
T  17352533 gataagagatgacctgacaatgtgtttataagtgggggcaatcatcacctcaca 17352480  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 601
Target Start/End: Original strand, 22925025 - 22925058
Alignment:
Q  568 catgtgtttataagtggggacaatcctcacttca 601  Q
    ||||||||||||| ||||||||||||||||||||    
T  22925025 catgtgtttataaatggggacaatcctcacttca 22925058  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 603
Target Start/End: Complemental strand, 8466835 - 8466769
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| ||||| |||||||||||| | | |||  ||||||||||||||||||||||||||| |||||    
T  8466835 gagtctcacatcggataagagatggcatgaacgagtgtttataagtggggacaatcctcacctcaca 8466769  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 29005843 - 29005901
Alignment:
Q  543 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttca 601  Q
    ||||||||||| |||||||||| |  || |||||||||||||| |||||||||||||||    
T  29005843 cacattggataggagatgacctgacaatatgtttataagtgggaacaatcctcacttca 29005901  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 626
Target Start/End: Original strand, 7729914 - 7730002
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacagggtcggttttgcaaggatgagt 626  Q
    ||||| |||||  |||| |||||| ||| | ||||||||||||||||||| |||||||||| |||||  | |||||||| ||||||||||    
T  7729914 gagtcccacatcagatatgagatggcctgaccatgtgtttataagtgggggcaatcctcacctcaca-agccggttttgtaaggatgagt 7730002  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 603
Target Start/End: Original strand, 12688280 - 12688346
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| |||||||||||  ||||||||| |  |||||||||||||||||| ||||||| || |||||    
T  12688280 gagtcccacattggatagaagatgacctgacaatgtgtttataagtgggggcaatccttacctcaca 12688346  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 603
Target Start/End: Complemental strand, 38447526 - 38447472
Alignment:
Q  549 ggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    |||||||||||| ||| |  |||||||||||||||||| |||||||||| |||||    
T  38447526 ggataagagatggcctgacaatgtgtttataagtgggggcaatcctcacctcaca 38447472  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 582
Target Start/End: Complemental strand, 12022499 - 12022454
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagt 582  Q
    ||||| ||||||||||||||| || |||||||| ||||||||||||    
T  12022499 gagtcccacattggataagaggtggcctcaacaagtgtttataagt 12022454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 603
Target Start/End: Original strand, 40014660 - 40014697
Alignment:
Q  566 aacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  40014660 aacatgtgtttataagtgggggcaatcttcacttcaca 40014697  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 597
Target Start/End: Complemental strand, 42049791 - 42049738
Alignment:
Q  544 acattggataagagatgacctcaacatgtgtttataagtggggacaatcctcac 597  Q
    |||||||| || ||||| |||  |||||||||||||||||||| ||||||||||    
T  42049791 acattggacaaaagatggcctggacatgtgtttataagtgggggcaatcctcac 42049738  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 603
Target Start/End: Original strand, 3823277 - 3823343
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| ||||| |||||||||||||||| |  || ||||||||||||||||||||| |||| |||||    
T  3823277 gagtctcacatcggataagagatgacctgataatttgtttataagtggggacaatcatcacatcaca 3823343  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 586
Target Start/End: Complemental strand, 9601937 - 9601888
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtgggg 586  Q
    ||||| |||||||||| ||||||||||| |||||||||||| ||||||||    
T  9601937 gagtcccacattggatgagagatgacctgaacatgtgtttaaaagtgggg 9601888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 2736278 - 2736218
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcac 597  Q
    ||||| ||||| || || |||||||||| |  |||||||||||||||||||||||||||||    
T  2736278 gagtcccacatcgggtaggagatgacctgacaatgtgtttataagtggggacaatcctcac 2736218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 538 - 626
Target Start/End: Complemental strand, 15103041 - 15102954
Alignment:
Q  538 agtcgcacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcacagggtcggttttgcaaggatgagt 626  Q
    |||| ||||| ||||| | |||||||| |  ||||||||||||| |||| |||| ||||||||||| || |||||||| ||||||||||    
T  15103041 agtctcacatcggataggtgatgacctgacaatgtgtttataagcgggggcaattctcacttcaca-ggccggttttgtaaggatgagt 15102954  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 543 - 603
Target Start/End: Complemental strand, 19639218 - 19639158
Alignment:
Q  543 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    ||||| |||||||| ||| ||| |  ||||||||||||||||||||||||||||| |||||    
T  19639218 cacataggataagatatggcctgacaatgtgtttataagtggggacaatcctcacctcaca 19639158  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 543 - 603
Target Start/End: Original strand, 15317532 - 15317591
Alignment:
Q  543 cacattggataagagatgacctcaacatgtgtttataagtggggacaatcctcacttcaca 603  Q
    |||||||||||| ||||| ||| | ||||||||||||||||||| |||||||||| |||||    
T  15317532 cacattggataaaagatggcctga-catgtgtttataagtgggggcaatcctcacctcaca 15317591  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 586
Target Start/End: Complemental strand, 18826599 - 18826550
Alignment:
Q  537 gagtcgcacattggataagagatgacctcaacatgtgtttataagtgggg 586  Q
    ||||| ||||||||||| |||||||||| |  ||||||||||||||||||    
T  18826599 gagtcccacattggataggagatgacctgacaatgtgtttataagtgggg 18826550  T

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Target: scaffold0692 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 603
Target Start/End: Complemental strand, 5623 - 5589
Alignment:
Q  569 atgtgtttataagtggggacaatcctcacttcaca 603  Q
    |||||||||||||||||| ||||||||||||||||    
T  5623 atgtgtttataagtgggggcaatcctcacttcaca 5589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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