View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675-4.16-Insertion-3 (Length: 672)
Name: NF3675-4.16-Insertion-3
Description: NF3675-4-16
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675-4.16-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 79 - 394
Target Start/End: Complemental strand, 11247645 - 11247333
Alignment:
| Q |
79 |
acaaaaagacgatacacactccgcaccgaataatgcccattcttctcgggtt-ccacactaataatctatttgtattctttactttttgtctttacaaac |
177 |
Q |
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| T |
11247645 |
acaaaaagaccatatacactccgcaccgaataatgcccattcttctcgggtttccacactaat---ctatttgtattctttagtttttgtctttaaaaac |
11247549 |
T |
|
| Q |
178 |
agaaatttatataaacannnnnnnaaatcttaagagatgtatcaatcttgtggtcgaagttcaccgttttgaataataacaataataataattctttttg |
277 |
Q |
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| T |
11247548 |
agaaatttatataaacatttttt-aaatcttaagagatgaatcaatcttgtgttcgaagttcaccattttgaataataacaataataatgattctttttg |
11247450 |
T |
|
| Q |
278 |
gaaataaagagtgtcagatgctgaagaagcactaaacaacgtctagactagagatggcaactcccaacagatcaaccaaatgcaaagaaataaattgagc |
377 |
Q |
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| T |
11247449 |
gaaataaagagtgtcagatgctgaagaatgactaaacaacaattagtctagagatggcaactcccaacaaatcaaccaaatgcaaagaaataaattgagc |
11247350 |
T |
|
| Q |
378 |
atgacaatgctcataaa |
394 |
Q |
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| T |
11247349 |
atgacaatgctcataaa |
11247333 |
T |
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Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 29206610 - 29206511
Alignment:
| Q |
26 |
ttccactccaataaccattctttcataggtggttattatccacaatatcttcgacaaaaagacgatacacactccgcaccgaataatgcccattcttctc |
125 |
Q |
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| T |
29206610 |
ttccactccaataaccactccttctcaggtgtgtattattcacaatatctttgacacaaagacgatacgcacttggtaccgaataatgcccattcttctc |
29206511 |
T |
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