View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3675-4.16-Insertion-4 (Length: 626)

Name: NF3675-4.16-Insertion-4
Description: NF3675-4-16
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3675-4.16-Insertion-4
NF3675-4.16-Insertion-4
[»] chr4 (22 HSPs)
chr4 (6-292)||(6880034-6880324)
chr4 (377-526)||(6879261-6879405)
chr4 (291-367)||(6879459-6879536)
chr4 (294-375)||(23292972-23293054)
chr4 (294-375)||(49431016-49431099)
chr4 (317-375)||(54580009-54580068)
chr4 (291-371)||(21945491-21945572)
chr4 (303-371)||(28964238-28964307)
chr4 (317-371)||(29205458-29205513)
chr4 (294-375)||(2361961-2362043)
chr4 (322-368)||(12797331-12797378)
chr4 (291-361)||(16303266-16303337)
chr4 (317-371)||(40179626-40179681)
chr4 (321-367)||(42640547-42640594)
chr4 (322-371)||(4157168-4157218)
chr4 (322-371)||(4157455-4157505)
chr4 (317-370)||(12895265-12895319)
chr4 (322-375)||(34306790-34306844)
chr4 (291-371)||(35157975-35158056)
chr4 (295-375)||(38846998-38847079)
chr4 (291-361)||(30298934-30299006)
chr4 (291-361)||(30327802-30327874)
[»] chr8 (21 HSPs)
chr8 (291-375)||(20873057-20873142)
chr8 (291-361)||(22651964-22652035)
chr8 (295-375)||(5813584-5813665)
chr8 (291-375)||(22595982-22596067)
chr8 (291-367)||(24613509-24613585)
chr8 (291-359)||(29510306-29510375)
chr8 (291-375)||(36450740-36450825)
chr8 (317-368)||(4948666-4948718)
chr8 (317-375)||(40332205-40332264)
chr8 (301-361)||(8342970-8343031)
chr8 (295-367)||(8343308-8343381)
chr8 (317-375)||(3025565-3025624)
chr8 (291-361)||(15816129-15816200)
chr8 (289-371)||(31556983-31557065)
chr8 (291-349)||(30271304-30271362)
chr8 (317-361)||(2572056-2572101)
chr8 (291-336)||(13436990-13437035)
chr8 (317-361)||(25566855-25566900)
chr8 (295-366)||(13844591-13844663)
chr8 (291-347)||(25192362-25192418)
chr8 (323-375)||(37283798-37283849)
[»] chr1 (24 HSPs)
chr1 (291-375)||(46348369-46348454)
chr1 (291-371)||(22881606-22881687)
chr1 (295-371)||(22515877-22515954)
chr1 (291-371)||(38078651-38078732)
chr1 (317-375)||(18337343-18337402)
chr1 (291-371)||(1815245-1815326)
chr1 (291-375)||(37598820-37598904)
chr1 (321-373)||(51410043-51410096)
chr1 (291-366)||(9103628-9103703)
chr1 (317-371)||(40258923-40258978)
chr1 (293-361)||(113289-113358)
chr1 (291-367)||(31672889-31672966)
chr1 (291-365)||(42359445-42359520)
chr1 (292-361)||(1486709-1486779)
chr1 (291-360)||(6415002-6415072)
chr1 (292-369)||(16297273-16297353)
chr1 (294-367)||(19058850-19058924)
chr1 (291-361)||(31694710-31694783)
chr1 (291-368)||(36878449-36878527)
chr1 (319-375)||(5898252-5898309)
chr1 (291-371)||(13997871-13997952)
chr1 (317-361)||(24577186-24577231)
chr1 (291-347)||(398780-398836)
chr1 (323-374)||(29163368-29163420)
[»] chr3 (22 HSPs)
chr3 (292-375)||(28917990-28918076)
chr3 (291-375)||(10954940-10955025)
chr3 (291-375)||(55401063-55401148)
chr3 (291-371)||(20503453-20503534)
chr3 (291-365)||(8587017-8587092)
chr3 (319-375)||(3865690-3865747)
chr3 (291-371)||(26492195-26492276)
chr3 (291-362)||(21479106-21479178)
chr3 (291-349)||(4987304-4987362)
chr3 (320-365)||(8593154-8593200)
chr3 (291-366)||(10268481-10268557)
chr3 (317-367)||(7928464-7928515)
chr3 (292-358)||(26508099-26508166)
chr3 (321-371)||(40993325-40993376)
chr3 (291-372)||(10335275-10335357)
chr3 (317-366)||(51206348-51206398)
chr3 (317-361)||(1509553-1509598)
chr3 (291-367)||(16000010-16000087)
chr3 (317-357)||(21256990-21257031)
chr3 (291-336)||(40052320-40052365)
chr3 (317-367)||(25775522-25775574)
chr3 (322-361)||(27505265-27505305)
[»] chr6 (26 HSPs)
chr6 (294-375)||(34595125-34595207)
chr6 (291-375)||(17841575-17841660)
chr6 (291-375)||(28152087-28152171)
chr6 (294-371)||(4877933-4878012)
chr6 (289-375)||(33001275-33001362)
chr6 (291-367)||(426508-426585)
chr6 (293-375)||(853845-853928)
chr6 (292-366)||(7977825-7977900)
chr6 (291-361)||(16766685-16766756)
chr6 (317-375)||(28715309-28715368)
chr6 (291-372)||(8776962-8777044)
chr6 (295-371)||(32978889-32978967)
chr6 (321-375)||(24645499-24645554)
chr6 (291-372)||(16833296-16833378)
chr6 (317-368)||(6898274-6898326)
chr6 (291-366)||(7938104-7938180)
chr6 (292-371)||(19040341-19040421)
chr6 (317-367)||(403858-403909)
chr6 (291-361)||(9107370-9107441)
chr6 (291-361)||(10770674-10770745)
chr6 (291-361)||(12696312-12696383)
chr6 (317-371)||(31579217-31579270)
chr6 (291-371)||(5626686-5626767)
chr6 (291-366)||(7265588-7265664)
chr6 (291-362)||(7801155-7801227)
chr6 (291-370)||(12868671-12868746)
[»] scaffold0053 (1 HSPs)
scaffold0053 (291-375)||(8786-8871)
[»] chr7 (13 HSPs)
chr7 (291-375)||(15680797-15680882)
chr7 (291-367)||(11061070-11061147)
chr7 (294-368)||(25481893-25481968)
chr7 (294-361)||(24339633-24339701)
chr7 (317-361)||(3991338-3991383)
chr7 (317-361)||(9778514-9778559)
chr7 (317-367)||(3721107-3721158)
chr7 (321-375)||(21864826-21864881)
chr7 (317-371)||(21880166-21880221)
chr7 (291-361)||(22602710-22602781)
chr7 (291-369)||(26733292-26733371)
chr7 (317-361)||(9408334-9408379)
chr7 (314-369)||(18213025-18213081)
[»] chr5 (15 HSPs)
chr5 (291-375)||(21191042-21191127)
chr5 (291-372)||(6247610-6247692)
chr5 (291-375)||(21576731-21576816)
chr5 (294-364)||(8420018-8420089)
chr5 (321-371)||(15884006-15884057)
chr5 (292-366)||(33178014-33178089)
chr5 (291-349)||(14674257-14674315)
chr5 (291-375)||(31084311-31084401)
chr5 (295-375)||(42893352-42893433)
chr5 (317-371)||(28588664-28588719)
chr5 (291-361)||(39698529-39698600)
chr5 (317-375)||(43564895-43564954)
chr5 (291-340)||(19552565-19552614)
chr5 (294-362)||(15382468-15382539)
chr5 (291-370)||(24906292-24906372)
[»] chr2 (17 HSPs)
chr2 (291-375)||(20242713-20242798)
chr2 (291-375)||(6940243-6940328)
chr2 (291-375)||(15972861-15972946)
chr2 (291-371)||(18841003-18841084)
chr2 (291-371)||(30404840-30404921)
chr2 (291-375)||(37558965-37559050)
chr2 (291-375)||(38117145-38117230)
chr2 (321-371)||(2438709-2438760)
chr2 (291-361)||(37419731-37419802)
chr2 (321-375)||(5040752-5040807)
chr2 (321-367)||(19536391-19536438)
chr2 (291-361)||(20539674-20539745)
chr2 (295-360)||(11223864-11223930)
chr2 (292-361)||(12668423-12668493)
chr2 (291-367)||(21624254-21624332)
chr2 (324-371)||(5367213-5367261)
chr2 (295-375)||(24009288-24009368)
[»] scaffold0652 (1 HSPs)
scaffold0652 (291-375)||(448-533)
[»] scaffold0722 (1 HSPs)
scaffold0722 (291-373)||(7020-7103)
[»] scaffold0122 (1 HSPs)
scaffold0122 (295-370)||(8002-8077)
[»] scaffold0103 (1 HSPs)
scaffold0103 (291-375)||(51799-51887)
[»] scaffold0050 (1 HSPs)
scaffold0050 (317-375)||(70292-70351)
[»] scaffold0361 (1 HSPs)
scaffold0361 (295-375)||(14522-14600)
[»] scaffold0223 (1 HSPs)
scaffold0223 (294-361)||(20163-20231)
[»] scaffold0083 (1 HSPs)
scaffold0083 (329-375)||(45516-45563)
[»] scaffold0003 (1 HSPs)
scaffold0003 (291-361)||(241582-241653)
[»] scaffold0066 (1 HSPs)
scaffold0066 (295-355)||(33370-33430)
[»] scaffold0027 (1 HSPs)
scaffold0027 (294-361)||(46673-46741)
[»] scaffold0011 (1 HSPs)
scaffold0011 (317-360)||(17750-17794)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 292
Target Start/End: Complemental strand, 6880324 - 6880034
Alignment:
Q  6 caagaacaacttattgcttagccagagggatgcaagaatcctttgttgaataagagcatggcctcattgcattagctctctaatggtgt--tattgtaga 103  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||    
T  6880324 caagaacaacttattgcttagccagagg-atgcaagaatcctttgttgaataagagcatg-cctcattgcattagctctctaatggtgtgttattgtaga 6880227  T
Q  104 atgaagttataatccttgaaagtattcatccactttctttgtctatattgagttcattccggtcgaataggactatactggttcatgaaaaccgtaaatg 203  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6880226 atgaagttaaattccttgaaagtattcatccactttctttgtctatattgagttcattccggtcgaataggactatactggtccatgaaaaccgtaaatg 6880127  T
Q  204 cacttatgtacaaatgattgtctcaagttccaaatcatgagtagcataattccttttggat----gttttcagttgtcacgatgaataagtca 292  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||||||||||||    
T  6880126 cacttatgtacaaatgattatctcaagttccaaatcatgagcagcataattccttttggatgtttgttttcagttgtcacgatgaataagtca 6880034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 377 - 526
Target Start/End: Complemental strand, 6879405 - 6879261
Alignment:
Q  377 catcaatcttgtcaaataaaatacatttagctccaaccaactctactagccaaa-tcaaccaaaaggcacacagtagcaacaatttagacacaactagaa 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||       
T  6879405 catcaatcttgtcaaataaaatacatttagctccaaccaactctactagccaaaatcaaacaaaaggcacacagtagcaacaatttagacacaacta--- 6879309  T
Q  476 aactacaaagcatagacacaaatatagtaagttgcccaaaggtgacaaaaa 526  Q
      || ||||||||||||||||||||||||||||| |||| |||||||||||    
T  6879308 --ctgcaaagcatagacacaaatatagtaagttg-ccaagggtgacaaaaa 6879261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 291 - 367
Target Start/End: Complemental strand, 6879536 - 6879459
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacg 367  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  6879536 cactgacacgccgacatagcaaaatttttggaaaaatcacataattaagtgtaattacaagtgtcggtgtcggacacg 6879459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 23293054 - 23292972
Alignment:
Q  294 tgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    ||||||||||||| ||| |||  |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  23293054 tgacacgccgacacagctaataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcggacacgacacgtgt 23292972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 49431016 - 49431099
Alignment:
Q  294 tgacacgccgacatagcaaattttttgaaaaaa-tcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    ||||||||||||| ||| |||  |||||||||| |||||||||| ||| |||||| | ||||||||||||||||||||||||||    
T  49431016 tgacacgccgacacagctaataatttgaaaaaaatcacataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgt 49431099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 54580068 - 54580009
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||    
T  54580068 tttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgt 54580009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 21945491 - 21945572
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    |||||||| ||||||| ||| |||  ||||||||||| |||||||| ||| ||||||| ||||||||||||||||| |||||    
T  21945491 cactgacatgccgacacagctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacatgacac 21945572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 28964307 - 28964238
Alignment:
Q  303 gacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    |||||||| |||  |||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||    
T  28964307 gacatagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtctgtgtcggacacgacac 28964238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 29205458 - 29205513
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||    
T  29205458 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgttggacacgacac 29205513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 2362043 - 2361961
Alignment:
Q  294 tgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||| |||||| ||| |||  ||||||||||| |||||||| ||| |||||| | |||||||||||||||||||| |||||    
T  2362043 tgacacaccgacacagctaataatttgaaaaaattacataatttagtgtaattaaaagtgtcggtgtcggacacgactcgtgt 2361961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 12797378 - 12797331
Alignment:
Q  322 aaaaatcacataattaagtataattaca-gtgtcggtgtcggacacga 368  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||||    
T  12797378 aaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacga 12797331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 16303337 - 16303266
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||| ||  ||| |||||||||||| | |||||| ||| ||||||| |||||||||||||    
T  16303337 cactgacacgccgacaaagataatattttgaaaaaatgatataatttagtgtaattacaagtgtcggtgtcg 16303266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 40179681 - 40179626
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||||||| ||| |||||| | | ||||||||||||||||||||    
T  40179681 tttgaaaaaatcacataattcagtgtaattatatgcgtcggtgtcggacacgacac 40179626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 367
Target Start/End: Original strand, 42640547 - 42640594
Alignment:
Q  321 aaaaaatcacataattaagtataattac-agtgtcggtgtcggacacg 367  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  42640547 aaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacg 42640594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 4157168 - 4157218
Alignment:
Q  322 aaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    ||||||||||||||| |||  ||||||| ||||||||||||||||||||||    
T  4157168 aaaaatcacataatttagtgcaattacaagtgtcggtgtcggacacgacac 4157218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 4157455 - 4157505
Alignment:
Q  322 aaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    ||||||||||||||| |||  ||||||| ||||||||||||||||||||||    
T  4157455 aaaaatcacataatttagtgcaattacaagtgtcggtgtcggacacgacac 4157505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 12895319 - 12895265
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgaca 370  Q
    ||||||||||||||||||||  || |||||| | |||||||||||||||||||||    
T  12895319 tttgaaaaaatcacataattttgtgtaattataagtgtcggtgtcggacacgaca 12895265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 34306844 - 34306790
Alignment:
Q  322 aaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||| |||||  ||| |||||||| ||||||||||||||||||||||||||    
T  34306844 aaaaatcagataatgtagtgtaattacaagtgtcggtgtcggacacgacacgtgt 34306790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 35158056 - 35157975
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||  | | |||  |||| ||||||||||||||| ||| |||||| | ||||||||||| ||||||||||    
T  35158056 cactgacacgccgacgcaactaataatttggaaaaatcacataatttagtgtaattataagtgtcggtgtctgacacgacac 35157975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 375
Target Start/End: Complemental strand, 38847079 - 38846998
Alignment:
Q  295 gacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    ||||| |||||| ||| |||  ||||||||||||| || ||| ||| |||||||| ||||| |||||||| |||||||||||    
T  38847079 gacactccgacacagctaataatttgaaaaaatcatattattcagtgtaattacaagtgtcagtgtcggatacgacacgtgt 38846998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 30298934 - 30299006
Alignment:
Q  291 cactgacacgccgacatagcaaattttttg-aaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||| ||| |||  |||| ||||||| |||||||| ||| ||||||| |||||||||||||    
T  30298934 cactgacacgccgacacagctaataatttgaaaaaaatgacataattcagtgtaattacaagtgtcggtgtcg 30299006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 30327802 - 30327874
Alignment:
Q  291 cactgacacgccgacatagcaaattttttg-aaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||| ||| |||  |||| ||||||| |||||||| ||| ||||||| |||||||||||||    
T  30327802 cactgacacgccgacacagctaataatttgaaaaaaatgacataattcagtgtaattacaagtgtcggtgtcg 30327874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 20873057 - 20873142
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||||||  |||  |||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||    
T  20873057 cactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgatacgtgt 20873142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 22651964 - 22652035
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||| ||| |||  |||||||||||||||||||| | ||||||||| |||||||||||||    
T  22651964 cactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcg 22652035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 5813584 - 5813665
Alignment:
Q  295 gacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||| ||| |||  ||||||||| ||||||| || ||| ||| |||| ||||||||||||||||||||||||||    
T  5813584 gacacgccgacacagctaataatttgaaaaagtcacatattttagtgtaaatacaagtgtcggtgtcggacacgacacgtgt 5813665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 22595982 - 22596067
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| ||| |||  ||| ||||||| |||||||| ||| ||||||| ||||| |||||||||| ||||||||||    
T  22595982 cactgacacgccgacacagctaataatttaaaaaaataacataattcagtgtaattacaagtgttggtgtcggacgcgacacgtgt 22596067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 367
Target Start/End: Original strand, 24613509 - 24613585
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacg 367  Q
    ||||||||| |||||| ||| |||  |||||||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  24613509 cactgacacaccgacacagctaataatttgaaaa-atcacataattaagtgtaattacaagtgtcggtgtcggacacg 24613585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 29510375 - 29510306
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgt 359  Q
    |||||||||||||||| ||| |||  ||||||||||||||| |||| ||||||||||| |||||||||||    
T  29510375 cactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagtataattacaagtgtcggtgt 29510306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 36450825 - 36450740
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| | | |||  ||||||||||||||| |||| ||| ||||||| ||||| ||||||||||||||| |||||    
T  36450825 cactgacacgccgacacaactaataatttgaaaaaatcacagaattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgt 36450740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 4948666 - 4948718
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacga 368  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  4948666 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacga 4948718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 40332205 - 40332264
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    ||||| |||||||||||||| ||| |||||||| |||||||||| |||||||||||||||    
T  40332205 tttgagaaaatcacataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgt 40332264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 8342970 - 8343031
Alignment:
Q  301 ccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||| |||  |||||||||||||||||||| ||| ||||||| |||||||||||||    
T  8342970 ccgacatagctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcg 8343031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 8343308 - 8343381
Alignment:
Q  295 gacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacg 367  Q
    ||||| |||||||||| |||  |||||||||||||||||||| ||| ||||||| |||||| |||||| |||||    
T  8343308 gacacaccgacatagctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcagtgtcgtacacg 8343381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 3025565 - 3025624
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattacag-tgtcggtgtcggacacgacacgtgt 375  Q
    ||||| |||||||||||||| ||| |||||| || |||| ||||||||||||||||||||    
T  3025565 tttgagaaaatcacataattcagtgtaattataggtgtcagtgtcggacacgacacgtgt 3025624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 15816200 - 15816129
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataatta-cagtgtcggtgtcg 361  Q
    |||||||||||||||| | | |||  |||||||||||||||||||| ||| ||||||  |||||||||||||    
T  15816200 cactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcg 15816129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 371
Target Start/End: Original strand, 31556983 - 31557065
Alignment:
Q  289 gtcactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||||| ||  |||  |||||||| ||||||||||| ||| ||||||| ||| |||||||| ||||||||||    
T  31556983 gtcactgacacgccgacacagttaataatttgaaaa-atcacataattcagtgtaattacaagtttcggtgtcagacacgacac 31557065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 30271362 - 30271304
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca 349  Q
    |||||||||||||||| ||| |||  |||||||||||||||||||  ||| ||||||||    
T  30271362 cactgacacgccgacacagctaatcatttgaaaaaatcacataatgcagtgtaattaca 30271304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 2572101 - 2572056
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||    
T  2572101 tttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcg 2572056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 13437035 - 13436990
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataatt 336  Q
    |||||||||||||||| ||| |||  ||||||||||||||||||||    
T  13437035 cactgacacgccgacacagctaataatttgaaaaaatcacataatt 13436990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 25566855 - 25566900
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||    
T  25566855 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 25566900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 366
Target Start/End: Complemental strand, 13844663 - 13844591
Alignment:
Q  295 gacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacac 366  Q
    ||||||||||||  || |||  ||||| |||||||||||||| ||| |||||| | |||||||||||||||||    
T  13844663 gacacgccgacactgctaataatttgagaaaatcacataattgagtgtaattatatgtgtcggtgtcggacac 13844591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 25192418 - 25192362
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataatta 347  Q
    |||||||||||||||| ||| |||  ||||||||| | |||||||| ||||||||||    
T  25192418 cactgacacgccgacacagctaataatttgaaaaagtgacataattcagtataatta 25192362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 37283849 - 37283798
Alignment:
Q  323 aaaatcacataattaagtataattacagtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||| ||| ||||||  |||||||||| |||||||||||||||    
T  37283849 aaaatcacataattcagtgtaattat-gtgtcggtgtgggacacgacacgtgt 37283798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 46348454 - 46348369
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| ||| |||  ||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||    
T  46348454 cactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgt 46348369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 22881687 - 22881606
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||| | | |||  |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  22881687 cactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacac 22881606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 371
Target Start/End: Complemental strand, 22515954 - 22515877
Alignment:
Q  295 gacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    ||||||| |||| ||| |||  |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  22515954 gacacgcagacacagctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacac 22515877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 38078732 - 38078651
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    |||||||||| ||||| ||| |||  |||||||||||||||||||| | | ||||||| |||||||||||||||||||||||    
T  38078732 cactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcggacacgacac 38078651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 18337343 - 18337402
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  18337343 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgt 18337402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 1815245 - 1815326
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||| |   |||| ||| |||||||||||||||| ||| ||||||| |||||||||||| ||||||||||    
T  1815245 cactgacacgccgacacaaataattattttaaaaaatcacataattcagtgtaattacaagtgtcggtgtccgacacgacac 1815326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 37598820 - 37598904
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| | | |||  ||||||||||||||| |||| ||| |||||| | ||||||||||||||||||||||||||    
T  37598820 cactgacacgccgacacaactaataatttgaaaaaatcaca-aattcagtgtaattataagtgtcggtgtcggacacgacacgtgt 37598904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 51410043 - 51410096
Alignment:
Q  321 aaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgt 373  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  51410043 aaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgt 51410096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 9103628 - 9103703
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattacagtgtcggtgtcggacac 366  Q
    |||||||||||||||| ||  |||  |||||||||||||||||||| ||| ||||   ||||||||||||||||||    
T  9103628 cactgacacgccgacacagttaataatttgaaaaaatcacataatttagtttaatacaagtgtcggtgtcggacac 9103703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 40258978 - 40258923
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||    
T  40258978 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcagacacgacac 40258923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 113289 - 113358
Alignment:
Q  293 ctgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||| ||| |||  |||||||||||||||||||| ||| ||||||| ||||| |||||||    
T  113289 ctgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtaggtgtcg 113358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 367
Target Start/End: Complemental strand, 31672966 - 31672889
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacg 367  Q
    ||||||||| |||||| ||| |||  |||||||||||||| ||||| ||| ||||||| ||| |||||||||||||||    
T  31672966 cactgacacaccgacacagctaataatttgaaaaaatcacttaattcagtgtaattacaagtctcggtgtcggacacg 31672889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 42359520 - 42359445
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggaca 365  Q
    ||||||||||| |||| | | |||  ||||||||||||||| |||| ||| ||||||| |||||||||||||||||    
T  42359520 cactgacacgctgacacatctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcggaca 42359445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 1486779 - 1486709
Alignment:
Q  292 actgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataatta-cagtgtcggtgtcg 361  Q
    |||||||||| |||| ||| |||  |||||||||||||||||||| ||| ||||||  |||||||||||||    
T  1486779 actgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcg 1486709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 6415072 - 6415002
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtc 360  Q
    ||||||||||||||||| || |||| ||||| |||||||||||||  ||| |||||| | |||||||||||    
T  6415072 cactgacacgccgacatcgctaattatttgagaaaatcacataatacagtttaattagatgtgtcggtgtc 6415002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 16297353 - 16297273
Alignment:
Q  292 actgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattacagtgtc---ggtgtcggacacgac 369  Q
    ||||||||| ||||| |||||||  | ||||||||||||| |||| ||| |||||||| ||||   |||||||||||||||    
T  16297353 actgacacgtcgacacagcaaataatatgaaaaaatcacaaaattcagtgtaattacaatgtccggggtgtcggacacgac 16297273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 367
Target Start/End: Complemental strand, 19058924 - 19058850
Alignment:
Q  294 tgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacg 367  Q
    ||||||||||||| ||| |||  ||| |||| || |||||||| ||| ||||||| |||||||||||||||||||    
T  19058924 tgacacgccgacacagctaataatttaaaaagataacataattcagtgtaattacaagtgtcggtgtcggacacg 19058850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 31694783 - 31694710
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaa--tcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||| ||| ||||||||| |||  ||||||||||  |||||||||| ||||||||||| |||||||||||||    
T  31694783 cactgatacgtcgacatagctaataatttgaaaaaaaatcacataattcagtataattacaagtgtcggtgtcg 31694710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 36878449 - 36878527
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacga 368  Q
    ||||||||||||||||  || |||  ||||| |||||||||||||| ||| |||||| | ||||||||||| |||||||    
T  36878449 cactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtctgacacga 36878527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 5898309 - 5898252
Alignment:
Q  319 tgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||||| ||| |||||| | | ||||||||| ||||||||||||||    
T  5898309 tgaaaaaatcacataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgt 5898252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 13997871 - 13997952
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    ||||||||||||||||  |  |||| ||| |||||||||||||||| ||| |||||| | |||||||||| ||| |||||||    
T  13997871 cactgacacgccgacaccgttaattatttaaaaaaatcacataattcagtgtaattatatgtgtcggtgttggagacgacac 13997952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 24577231 - 24577186
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||    
T  24577231 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 24577186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 398836 - 398780
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataatta 347  Q
    ||||||||||||||||  || |||  |||||||||||||||||||| ||| ||||||    
T  398836 cactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaatta 398780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 29163420 - 29163368
Alignment:
Q  323 aaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtg 374  Q
    |||||||||||||| | | |||||| | |||||||||||||||||||||||||    
T  29163420 aaaatcacataattcaatttaattatatgtgtcggtgtcggacacgacacgtg 29163368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 28917990 - 28918076
Alignment:
Q  292 actgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtc--ggacacgacacgtgt 375  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| ||| ||||||| ||||||||||||  |||||||||||||||    
T  28917990 actgacacgccgacatagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtggacacgacacgtgt 28918076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 10954940 - 10955025
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| | | |||  |||||||||||||||||||| ||| |||| || |||||||||||||||||||||||||||    
T  10954940 cactgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgt 10955025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 55401063 - 55401148
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||| ||||||||| | | |||  |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  55401063 cactgatacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgt 55401148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 20503453 - 20503534
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||| | |||||  ||||||||||| |||||||| ||| ||||||| ||||||||||| |||||||||||    
T  20503453 cactgacacgccgacacaacaaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgttggacacgacac 20503534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 8587092 - 8587017
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggaca 365  Q
    |||||||||||||||| | | | |  |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  8587092 cactgacacgccgacacatctagtaatttgaaaaaatcacataattaagtgtaattacaagtgtcggtgtcggaca 8587017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 3865690 - 3865747
Alignment:
Q  319 tgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    ||||||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||    
T  3865690 tgaaaaactcacataattcagtataattacaagtgtcggtgtctgacacgacacgtgt 3865747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 26492276 - 26492195
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||| ||| |||  ||||||||||||| | |||| ||| ||||||| ||| |||||||||||||||||||    
T  26492276 cactgacacgccgacagagctaataatttgaaaaaatcatacaattcagtgtaattacaagtatcggtgtcggacacgacac 26492195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 21479106 - 21479178
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcgg 362  Q
    |||||||||||||||| ||| |||  ||||||||||||||| |||| ||| ||||||| ||||||||||||||    
T  21479106 cactgacacgccgacacagctaataatttgaaaaaatcacacaattcagtgtaattactagtgtcggtgtcgg 21479178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 4987362 - 4987304
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca 349  Q
    |||||||||||||||| ||| |||  |||||||||||||||||||| ||| ||||||||    
T  4987362 cactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattaca 4987304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 8593154 - 8593200
Alignment:
Q  320 gaaaaaatcacataattaagtataattac-agtgtcggtgtcggaca 365  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  8593154 gaaaaaatcacataattcagtataattacaagtgtcggtgtcggaca 8593200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 366
Target Start/End: Complemental strand, 10268557 - 10268481
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacac 366  Q
    |||||||||||||||| ||  |||  |||||||||||||||||||| ||| ||||||| |||||| ||||| |||||    
T  10268557 cactgacacgccgacacagttaataatttgaaaaaatcacataatttagtgtaattacaagtgtcagtgtcagacac 10268481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 7928464 - 7928515
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacg 367  Q
    |||||||||||||||||||| ||| |||||| | ||||||||||||||||||    
T  7928464 tttgaaaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacg 7928515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 26508099 - 26508166
Alignment:
Q  292 actgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtg 358  Q
    |||||||||| |||| ||| |||  |||||||||||||||||||| ||| ||||||| ||||||||||    
T  26508099 actgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtg 26508166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 40993376 - 40993325
Alignment:
Q  321 aaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||| ||| |||||| | ||||||||||||||||||||||    
T  40993376 aaaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacac 40993325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 10335357 - 10335275
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacg 372  Q
    |||||||||||||||| | | |||  ||||||||| ||||||| || ||| ||| |||| ||||||||||||| |||||||||    
T  10335357 cactgacacgccgacacaactaataatttgaaaaagtcacatattttagtgtaaatacaagtgtcggtgtcgggcacgacacg 10335275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 51206398 - 51206348
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacac 366  Q
    |||||||||||||||||||| ||| ||| ||| ||||||||||||||||||    
T  51206398 tttgaaaaaatcacataattcagtgtaaatacaagtgtcggtgtcggacac 51206348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 1509553 - 1509598
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||    
T  1509553 tttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcg 1509598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 367
Target Start/End: Complemental strand, 16000087 - 16000010
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacg 367  Q
    |||||||||||||||| | | |||  ||| ||||||| |||||||| ||| ||| |||| ||||||||||||||||||    
T  16000087 cactgacacgccgacacaactaataatttaaaaaaataacataattcagtgtaactacaagtgtcggtgtcggacacg 16000010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 21257031 - 21256990
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggt 357  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  21257031 tttgaaaaaatcacataattcagtataattacaagtgtcggt 21256990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 40052320 - 40052365
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataatt 336  Q
    |||||||||||||||| ||| |||  ||||||||||||||||||||    
T  40052320 cactgacacgccgacacagctaataatttgaaaaaatcacataatt 40052365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 25775522 - 25775574
Alignment:
Q  317 tttgaaaa-aatcacataattaagtataattaca-gtgtcggtgtcggacacg 367  Q
    |||||||| |||||||||||| ||| |||||||| ||||||||||||||||||    
T  25775522 tttgaaaataatcacataattcagtgtaattacaagtgtcggtgtcggacacg 25775574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 27505265 - 27505305
Alignment:
Q  322 aaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  27505265 aaaaatcacataattaagtgtaattacaagtgtcggtgtcg 27505305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 34595125 - 34595207
Alignment:
Q  294 tgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    ||||||||||||| | | |||  |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  34595125 tgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgt 34595207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 17841660 - 17841575
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| ||| |||  |||||||||||||||||||| ||| ||||||| |||| ||||||||||||||||| ||||    
T  17841660 cactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaattacaagtgacggtgtcggacacgacatgtgt 17841575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 28152087 - 28152171
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| ||| |||  ||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  28152087 cactgacacgccgacaaagctaataatttgaaaaa-tcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgt 28152171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 4877933 - 4878012
Alignment:
Q  294 tgacacgccgacatagcaaattttttgaaaaaa-tcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    |||||| |||||| ||| |||  |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  4877933 tgacacaccgacacagctaataatttgaaaaaagtcacataattaagtataattacaagtgtcggtgtcggacacgacac 4878012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 289 - 375
Target Start/End: Complemental strand, 33001362 - 33001275
Alignment:
Q  289 gtcactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||| |||||||||||||  || |||  |||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||    
T  33001362 gtcaatgacacgccgacactgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgt 33001275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 367
Target Start/End: Complemental strand, 426585 - 426508
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacg 367  Q
    |||||||||||||||| ||  |||  |||||||||||||||||||||| | ||||||| |||||||||||||||||||    
T  426585 cactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaattacaagtgtcggtgtcggacacg 426508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 375
Target Start/End: Complemental strand, 853928 - 853845
Alignment:
Q  293 ctgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||| | | |||  ||||||||||||||||||||||||  |||||| ||||||||||||||| |||||| ||||    
T  853928 ctgacacgccgacacaactaataatttgaaaaaatcacataattaagtgcaattacaagtgtcggtgtcggatacgacatgtgt 853845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 366
Target Start/End: Complemental strand, 7977900 - 7977825
Alignment:
Q  292 actgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacac 366  Q
    ||||||||||||||| ||| |||  ||||||||||| |||||||| ||| ||||||| ||||||||||||||||||    
T  7977900 actgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcggacac 7977825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 16766685 - 16766756
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||| ||| |||  |||||||||||||||||||| ||| ||||||| |||||||||||||    
T  16766685 cactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 16766756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 28715309 - 28715368
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    ||||||||||| |||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  28715309 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgt 28715368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 8777044 - 8776962
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacg 372  Q
    |||||||||||||||| | | |||  ||||||||||||||| |||| ||| ||||||| ||||| ||||||||||||||||||    
T  8777044 cactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaattacaagtgttggtgtcggacacgacacg 8776962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 295 - 371
Target Start/End: Complemental strand, 32978967 - 32978889
Alignment:
Q  295 gacacgccgacatagcaaattttttgaaaaaat-cacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    |||||||||||| ||| |||  ||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||    
T  32978967 gacacgccgacacagctaataatttgaaaaaaaacacataattaagtgtaattacaagtgtcggtgtcggacacgacac 32978889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 24645499 - 24645554
Alignment:
Q  321 aaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||    
T  24645499 aaaaaatcacataattcagtatagttacaagtgtcggtgtcagacacgacacgtgt 24645554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 16833296 - 16833378
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacg 372  Q
    |||||||||||||||| | | |||  ||||||||||||||||| || ||| ||||||| |||||||||||  |||||||||||    
T  16833296 cactgacacgccgacacaactaataatttgaaaaaatcacatacttcagtgtaattacaagtgtcggtgttagacacgacacg 16833378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 6898326 - 6898274
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacga 368  Q
    |||||| |||| |||||||||||| ||||||| ||||||||||||||||||||    
T  6898326 tttgaacaaattacataattaagtgtaattacaagtgtcggtgtcggacacga 6898274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 7938104 - 7938180
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataatta-cagtgtcggtgtcggacac 366  Q
    |||||||||||||||| ||| |||  ||||||||||||| |||||| ||| ||||||  |||||||||||| |||||    
T  7938104 cactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattataagtgtcggtgtccgacac 7938180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 19040341 - 19040421
Alignment:
Q  292 actgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||  || |||  ||||| |||||||||||||| ||| |||||| | ||||| ||||||||||||||||    
T  19040341 actgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgtcggacacgacac 19040421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 403909 - 403858
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacg 367  Q
    |||||||||||||||||||| ||| ||| ||| |||||||||||||||||||    
T  403909 tttgaaaaaatcacataatttagtgtaactacaagtgtcggtgtcggacacg 403858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 9107441 - 9107370
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||| ||||||||||| ||| |||  ||||||||||||||| |||| ||| ||||||| |||||||||||||    
T  9107441 cactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcg 9107370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 10770745 - 10770674
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||| ||| | | |||  |||||||||||||||||||| ||| ||||||| |||||||||||||    
T  10770745 cactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 10770674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 12696312 - 12696383
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||| ||| |||  ||||||||||| |||||||| ||| ||||||| |||||| ||||||    
T  12696312 cactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcagtgtcg 12696383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 31579270 - 31579217
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattacagtgtcggtgtcggacacgacac 371  Q
    ||||| |||||||||||||| ||| ||||||  ||||||||||||||||||||||    
T  31579270 tttgagaaaatcacataattcagtgtaattat-gtgtcggtgtcggacacgacac 31579217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 5626767 - 5626686
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||| | | |||||||| | |||||||| || || ||| ||| || | ||||||||||||||||||||||    
T  5626767 cactgacacgccgacacaactaatttttttagaaaatcacttagttcagtgtaaatatatgtgtcggtgtcggacacgacac 5626686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 366
Target Start/End: Complemental strand, 7265664 - 7265588
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacac 366  Q
    |||||||||||| |||  || |||  ||||| |||||||||||||| ||| |||||| | |||||||||||||||||    
T  7265664 cactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 7265588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 7801227 - 7801155
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcgg 362  Q
    |||| ||||||||||| | | |||  |||||||||||||||||||| ||  ||||||| ||||||||||||||    
T  7801227 cactaacacgccgacacaactaataatttgaaaaaatcacataattcagcgtaattacaagtgtcggtgtcgg 7801155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 12868746 - 12868671
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgaca 370  Q
    |||||||||||||||| ||  |||  ||||||||||||||| ||     ||||||||| ||||||||||||||||||||||    
T  12868746 cactgacacgccgacacagttaataatttgaaaaaatcacacaa-----tataattactagtgtcggtgtcggacacgaca 12868671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 8786 - 8871
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| ||| |||  ||||||||||||| || ||| ||| ||||||| |||||||||||||||||||||||||||    
T  8786 cactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgtaattacaagtgtcggtgtcggacacgacacgtgt 8871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 15680797 - 15680882
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataatta-cagtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||||||| |||  ||  |||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||    
T  15680797 cactgacacgccgacatagctaataattaaaaaaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacacgtgt 15680882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 367
Target Start/End: Complemental strand, 11061147 - 11061070
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacg 367  Q
    ||||||||| |||||| ||| |||  |||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  11061147 cactgacacaccgacacagctaataatttgaaaaaatcacataatttagtataattacaagtgtcggtgtcagacacg 11061070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 368
Target Start/End: Original strand, 25481893 - 25481968
Alignment:
Q  294 tgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacga 368  Q
    ||||||||||||| ||| |||  |||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||    
T  25481893 tgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgtcggacacga 25481968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 24339633 - 24339701
Alignment:
Q  294 tgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    ||||||||||||| ||| |||  |||||||||||||||||||| ||| ||||||| |||||||||||||    
T  24339633 tgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 24339701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 3991338 - 3991383
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||    
T  3991338 tttgaaaaaatcacataattcagtataattacaagtgtcggtgtcg 3991383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 9778514 - 9778559
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||    
T  9778514 tttgaaaaaatcacataattcagtataattacaagtgtcggtgtcg 9778559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 3721107 - 3721158
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacg 367  Q
    ||||| |||||||||||||| |||||||||| | ||||||||||||||||||    
T  3721107 tttgagaaaatcacataatttagtataattatatgtgtcggtgtcggacacg 3721158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 21864826 - 21864881
Alignment:
Q  321 aaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    ||||||||| |||||| ||| |||||||| |||||| |||||||||||||||||||    
T  21864826 aaaaaatcatataatttagtgtaattacaagtgtcgctgtcggacacgacacgtgt 21864881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 21880166 - 21880221
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    ||||| ||||| |||||||| ||| |||||||| ||||||||||||||||||||||    
T  21880166 tttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggacacgacac 21880221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 22602781 - 22602710
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcg 361  Q
    ||||||||||||||||  | ||||| ||||| |||||||||||||| ||| |||||| | ||||||||||||    
T  22602781 cactgacacgccgacaccgtaaattatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 22602710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 369
Target Start/End: Original strand, 26733292 - 26733371
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgac 369  Q
    |||||||||| |||||  || |||  ||||| |||||||||||||| ||| |||||| | ||||||||||||||||||||    
T  26733292 cactgacacgtcgacaccgctaataatttgacaaaatcacataattcagtctaattaaatgtgtcggtgtcggacacgac 26733371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 9408379 - 9408334
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||    
T  9408379 tttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcg 9408334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 18213081 - 18213025
Alignment:
Q  314 ttttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgac 369  Q
    |||||| | |||||||||||||| ||| |||||| | ||||||||||||||||||||    
T  18213081 tttttttagaaaatcacataatttagtgtaattatatgtgtcggtgtcggacacgac 18213025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 21191127 - 21191042
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||| ||||||| ||| |||  |||||||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  21191127 cactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacaacacgtgt 21191042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 6247610 - 6247692
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacg 372  Q
    |||||||||||||||| | | |||  |||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||    
T  6247610 cactgacacgccgacacatctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacggcacg 6247692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 21576816 - 21576731
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||| ||||| ||| ||| |||  |||||||||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||    
T  21576816 cactgatacgccaacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgt 21576731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 8420018 - 8420089
Alignment:
Q  294 tgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggac 364  Q
    ||||||||||||||||| |||  ||||||||||| |||||||| | | ||||||| ||||||||||||||||    
T  8420018 tgacacgccgacatagctaataatttgaaaaaataacataattcaatgtaattacaagtgtcggtgtcggac 8420089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 15884006 - 15884057
Alignment:
Q  321 aaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||||||    
T  15884006 aaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacac 15884057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 366
Target Start/End: Original strand, 33178014 - 33178089
Alignment:
Q  292 actgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacac 366  Q
    ||||||||||||||| | | |||  ||| |||||||||||||||| ||| ||||||| ||||||||||||||||||    
T  33178014 actgacacgccgacacaactaataatttaaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacac 33178089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 14674257 - 14674315
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca 349  Q
    |||||||||||||||| ||| |||  |||||||||||||||||||| ||| ||||||||    
T  14674257 cactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaattaca 14674315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 31084311 - 31084401
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcg-----gtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| ||| |||  |||||||||||||||||||| | | |||||||| ||||||     ||||||||||||||||||||    
T  31084311 cactgacacgccgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgtcgatgtcgtgtcggacacgacacgtgt 31084401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 42893352 - 42893433
Alignment:
Q  295 gacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    ||||| |||||| ||| |||  |||||||||||||||||||  ||| ||||||| |||||||||||| ||||| ||||||||    
T  42893352 gacacaccgacacagctaataatttgaaaaaatcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgt 42893433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 28588719 - 28588664
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattacag-tgtcggtgtcggacacgacac 371  Q
    ||||| |||||||||||||| ||| |||||| || |||||||||||||||||||||    
T  28588719 tttgagaaaatcacataattcagtgtaattataggtgtcggtgtcggacacgacac 28588664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 39698529 - 39698600
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    ||||||||||| |||| ||| |||  |||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  39698529 cactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcg 39698600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 43564895 - 43564954
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||| ||||||||||||||| ||| |||||| | ||||||||||||||||||||| ||||    
T  43564895 tttggaaaaatcacataatttagtgtaattataagtgtcggtgtcggacacgacatgtgt 43564954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 19552614 - 19552565
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagt 340  Q
    |||||||||||||||| ||  |||  ||||||||||||||||||||||||    
T  19552614 cactgacacgccgacacagttaataatttgaaaaaatcacataattaagt 19552565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 15382468 - 15382539
Alignment:
Q  294 tgacacgccgacatagcaaattttttgaaaaaa--tcacataattaagtataattac-agtgtcggtgtcgg 362  Q
    ||||||||||||| ||| |||  ||||||||||  ||| |||||| ||||||||||| ||||||||||||||    
T  15382468 tgacacgccgacacagctaataatttgaaaaaaaatcatataattcagtataattacaagtgtcggtgtcgg 15382539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 24906372 - 24906292
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgaca 370  Q
    |||||||||||| ||| ||  |||  ||||||||||| |||||||| ||| ||||||| ||||||||| ||||||| ||||    
T  24906372 cactgacacgccaacacagataataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtatcggacatgaca 24906292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 20242798 - 20242713
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| | | |||||||| | |||||||||||||| ||| |||||| | ||||||||||||||||| ||||||||    
T  20242798 cactgacacgccgacacaactaatttttttagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgt 20242713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 6940243 - 6940328
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| ||| |||  ||| ||||| | |||||||||||| ||||||| ||||||||| || ||||||||||||||    
T  6940243 cactgacacgccgacacagctaataattttaaaaagttacataattaagtgtaattacaagtgtcggtatccgacacgacacgtgt 6940328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 15972861 - 15972946
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| |   |||  ||||||||||| ||| |||| ||| |||||||| ||||||||||||||||||||||||||    
T  15972861 cactgacacgccgacacaattaataatttgaaaaaattacacaattcagtgtaattacaagtgtcggtgtcggacacgacacgtgt 15972946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 18841084 - 18841003
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    ||||||||||| |||| | | |||  ||||||||||| |||||||||||| ||||||| |||||||||||| ||||||||||    
T  18841084 cactgacacgctgacacaactaataatttgaaaaaattacataattaagtgtaattacaagtgtcggtgtcagacacgacac 18841003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 30404921 - 30404840
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacac 371  Q
    ||||||||||||||||  |  |||  |||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||    
T  30404921 cactgacacgccgacacggttaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggcgtcggacacgacac 30404840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 37558965 - 37559050
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| ||| |||  |||| ||||||||||||||| | | ||||||| ||||||||||||||||  |||||||||    
T  37558965 cactgacacgccgacacagctaataatttgtaaaaatcacataattcaatgtaattacaagtgtcggtgtcggacttgacacgtgt 37559050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 38117230 - 38117145
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| ||| |||  ||||||||||||||||| ||  || ||||||| ||||| |||||||||||| ||||||||    
T  38117230 cactgacacgccgacacagctaataatttgaaaaaatcacatacttcggtgtaattacaagtgttggtgtcggacacaacacgtgt 38117145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 2438760 - 2438709
Alignment:
Q  321 aaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||||||||    
T  2438760 aaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacac 2438709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 37419731 - 37419802
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    ||||||||||||||||| ||||||  ||||||||||||||| |||| ||| ||||||| |||| ||||||||    
T  37419731 cactgacacgccgacatggcaaataatttgaaaaaatcacaaaattcagtgtaattacaagtgccggtgtcg 37419802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 5040752 - 5040807
Alignment:
Q  321 aaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| | | |||||||| ||||||||||||||||||||| ||||    
T  5040752 aaaaaatcacataattcaatgtaattacaagtgtcggtgtcggacacgacatgtgt 5040807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 19536438 - 19536391
Alignment:
Q  321 aaaaaatcacataattaagtataattac-agtgtcggtgtcggacacg 367  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  19536438 aaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacg 19536391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 20539745 - 20539674
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    |||||||||| ||||| ||| |||  ||||||||||||| |||||| ||| ||||||| |||||||||||||    
T  20539745 cactgacacgtcgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcg 20539674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 11223930 - 11223864
Alignment:
Q  295 gacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtc 360  Q
    ||||||| |||| ||| ||| |||||||||||| |||||||| ||| ||||||| ||||||||||||    
T  11223930 gacacgctgacacagctaatattttgaaaaaataacataattcagtgtaattacaagtgtcggtgtc 11223864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 12668493 - 12668423
Alignment:
Q  292 actgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataatta-cagtgtcggtgtcg 361  Q
    ||||||||||||||||| | |||  ||||||||||| |||||||| ||| ||||||  |||||||||||||    
T  12668493 actgacacgccgacataactaataatttgaaaaaatgacataattcagtgtaattataagtgtcggtgtcg 12668423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 367
Target Start/End: Original strand, 21624254 - 21624332
Alignment:
Q  291 cactgacacgccgacatagcaaatt-ttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacg 367  Q
    |||||||||||||||| ||| |||  |||| |||||||  ||||||| ||| |||||||| ||||||||||||||||||    
T  21624254 cactgacacgccgacacagctaataattttaaaaaaatagcataattcagtgtaattacaagtgtcggtgtcggacacg 21624332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 5367213 - 5367261
Alignment:
Q  324 aaatcacataattaagtataattaca-gtgtcggtgtcggacacgacac 371  Q
    ||||||||||||| ||| |||||| | ||||||||||||||||||||||    
T  5367213 aaatcacataattcagtgtaattatatgtgtcggtgtcggacacgacac 5367261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 24009288 - 24009368
Alignment:
Q  295 gacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattacagtgtcggtgtcggacacgacacgtgt 375  Q
    |||||| ||||| ||| |||||||| | ||||||||| |||  ||| ||| |   ||||||||||||||||||||||||||    
T  24009288 gacacggcgacacagctaatttttttagaaaatcacaaaatgcagtgtaaattatgtgtcggtgtcggacacgacacgtgt 24009368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 533 - 448
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||| |||||||||  || |||  ||||||||||||||| |||| ||| |||||||| |||||||||||||||||||| |||||    
T  533 cactgatacgccgacactgctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgt 448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 7103 - 7020
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcggacacgacacgt 373  Q
    |||||| ||| ||||| ||| |||  ||||||||||| |||||||| ||||||||||| ||||| |||||||||||| ||||||    
T  7103 cactgatacgtcgacacagctaataatttgaaaaaattacataatttagtataattacaagtgtaggtgtcggacacaacacgt 7020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 295 - 370
Target Start/End: Original strand, 8002 - 8077
Alignment:
Q  295 gacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattacagtgtcggtgtcggacacgaca 370  Q
    |||||||||||| | | |||  ||||||||||||| |||||  ||| |||||| ||||||||||||||||||||||    
T  8002 gacacgccgacacaactaataatttgaaaaaatcatataatacagtgtaattaaagtgtcggtgtcggacacgaca 8077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 51799 - 51887
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattaca----gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||||||| ||| |||  |||||||||||||||||||| ||| ||||||||     |||||||||| ||||||| ||||||    
T  51799 cactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttgtcggtgtcagacacgatacgtgt 51887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 70292 - 70351
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    ||||||||||| |||||||| ||| |||||| | ||||||||||||||||||||||||||    
T  70292 tttgaaaaaataacataattcagtgtaattataagtgtcggtgtcggacacgacacgtgt 70351  T

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Target: scaffold0361 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 14522 - 14600
Alignment:
Q  295 gacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattacagtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||||||| | | |||  |||||||||||||||||||| ||| ||||||||  || |||||||||||||||||||||    
T  14522 gacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattaca-agt-ggtgtcggacacgacacgtgt 14600  T

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Target: scaffold0223 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 20163 - 20231
Alignment:
Q  294 tgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    ||||||||||||| ||| |||  |||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  20163 tgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcg 20231  T

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Target: scaffold0083 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 45563 - 45516
Alignment:
Q  329 acataattaagtataattaca-gtgtcggtgtcggacacgacacgtgt 375  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  45563 acataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgt 45516  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 241582 - 241653
Alignment:
Q  291 cactgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataatta-cagtgtcggtgtcg 361  Q
    |||||||||||||||| ||| |||  |||| ||||||||||||||| ||| ||||||  |||||||||||||    
T  241582 cactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattatgagtgtcggtgtcg 241653  T

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Target: scaffold0066 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 33430 - 33370
Alignment:
Q  295 gacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattacagtgtcg 355  Q
    |||||||||||| ||| |||  ||||||||||| |||||||| ||| |||||||| |||||    
T  33430 gacacgccgacacagctaataatttgaaaaaataacataattcagtgtaattacaatgtcg 33370  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 46673 - 46741
Alignment:
Q  294 tgacacgccgacatagcaaattttttgaaaaaatcacataattaagtataattac-agtgtcggtgtcg 361  Q
    ||||||||||||| ||  |||  |||||||||||||||||||| ||| ||||||| | |||||||||||    
T  46673 tgacacgccgacacagttaataatttgaaaaaatcacataattcagtgtaattacaaatgtcggtgtcg 46741  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 17794 - 17750
Alignment:
Q  317 tttgaaaaaatcacataattaagtataattac-agtgtcggtgtc 360  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||    
T  17794 tttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtc 17750  T

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