View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675-4.16-Insertion-5 (Length: 98)
Name: NF3675-4.16-Insertion-5
Description: NF3675-4-16
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675-4.16-Insertion-5 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 79; Significance: 2e-37; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 5949022 - 5948933
Alignment:
| Q |
8 |
gccaaaaccacggagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcatcaa |
98 |
Q |
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| T |
5949022 |
gccaaaaccacg-agtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccgtctttattggcatcagctttcatcaa |
5948933 |
T |
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Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 5954669 - 5954583
Alignment:
| Q |
8 |
gccaaaaccacggagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcat |
95 |
Q |
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| T |
5954669 |
gccaaaaccacgg-gtaaggagataatcaattaaagtgtcgatttcctcgccactgatttgtccgtctttgttggcatcagctttcat |
5954583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 5937830 - 5937748
Alignment:
| Q |
9 |
ccaaaaccacggagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagcttt |
92 |
Q |
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| T |
5937830 |
ccaaaaccacgg-gtaaggagataatcaattaaagtatcaatttcctcaccactgatttctccatctttgttgaaatcagcttt |
5937748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 5960894 - 5960835
Alignment:
| Q |
28 |
agataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatca |
87 |
Q |
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| T |
5960894 |
agataatcaactaaagtatcaatttcctcaccactaatttgtccatcattgttggcatca |
5960835 |
T |
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