View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675-4.16-Insertion-6 (Length: 90)
Name: NF3675-4.16-Insertion-6
Description: NF3675-4-16
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675-4.16-Insertion-6 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 63; Significance: 5e-28; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 179897 - 179974
Alignment:
| Q |
12 |
aatgttaaataaaccaggaacacgacctgcaaatcacattcacattaaacaaaattgacagaaataacacttgtagagg |
90 |
Q |
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| T |
179897 |
aatgttaaataaaccag-aacacaacctgcaaatcacattcacattaaacaaaattgatagaaataacacttgtagagg |
179974 |
T |
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Target: scaffold0019; HSP #2
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 151072 - 151120
Alignment:
| Q |
42 |
aaatcacattcacattaaacaaaattgacagaaataacacttgtagagg |
90 |
Q |
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| T |
151072 |
aaatcacattcacattaaacaaaattgatagaaataacacttgtagagg |
151120 |
T |
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