View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3675-4.16-Insertion-7 (Length: 463)
Name: NF3675-4.16-Insertion-7
Description: NF3675-4-16
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675-4.16-Insertion-7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 7 - 454
Target Start/End: Complemental strand, 35770817 - 35770370
Alignment:
| Q |
7 |
atcacaccaataaacttagatttgttaagcaaacatcaataacaattaagaaaccgaacagtccaagcaacaacgtgtaaagtaaattcacaataaagag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35770817 |
atcacaccaataaacttagatttgttaagcaaacatcaataacaattaagaaaccgaacagtccaagcaacaacgtgtaaagtaaattcacaataaagag |
35770718 |
T |
|
| Q |
107 |
agttgagaaacaaaacacatcaagattttattacccagttcagttcaaaatgatctatatttggggaagagatcaacatttatacaatccactatgaatg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35770717 |
agttgagaaacaaaacacatcaagattttattacccagttcagttcaaaatgatctatatttggggaagagatcaacatttatacaatccactatgaatg |
35770618 |
T |
|
| Q |
207 |
agtttcttagaaagagatacaaagagattgcaaagacttggttcaacaaattctcaaagaataacctaatttctaccaattttccattatatttccataa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35770617 |
agtttcttagaaagagatacaaagagattgcaaagacttggttcaacaaattctcgaagaataacctaatttctaccaattttccattatatttccataa |
35770518 |
T |
|
| Q |
307 |
atacgagactcaccacccaaagtgtttacaatgtgtttctcaacccaataatttcacctcaaaagacatagctttttctcaagagnnnnnnntctaagtt |
406 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35770517 |
atacgagactcaccacccaaaatgtttacaatgtgtttctcaacccaataatttcacctcaaaagacatagctttttctcaagagcccccgctctaagtt |
35770418 |
T |
|
| Q |
407 |
ctctaagattattcaacaaaacgatgaaagaatgcttaaattgtcatt |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35770417 |
ctctaagattattcaacaaaacgatgaaagaatgcttaaattgtcatt |
35770370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 4055818 - 4055856
Alignment:
| Q |
191 |
caatccactatgaatgagtttcttagaaagagatacaaa |
229 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
4055818 |
caatccactatcaatgagtttcttacaaagagatacaaa |
4055856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 13938251 - 13938213
Alignment:
| Q |
191 |
caatccactatgaatgagtttcttagaaagagatacaaa |
229 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
13938251 |
caatccactatcaatgagtttcttacaaagagatacaaa |
13938213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 32471573 - 32471536
Alignment:
| Q |
192 |
aatccactatgaatgagtttcttagaaagagatacaaa |
229 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
32471573 |
aatccactatcaatgagtttcttacaaagagatacaaa |
32471536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 6017062 - 6017022
Alignment:
| Q |
248 |
ttcaacaaattctcaaagaataacctaatttctaccaattt |
288 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
6017062 |
ttcaacaggttctcaaagaagaacctaatttctaccaattt |
6017022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University