View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_high_1 (Length: 729)
Name: NF3675_high_1
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 392 - 714
Target Start/End: Complemental strand, 2120318 - 2119996
Alignment:
| Q |
392 |
gataggatgctgccataattaccgatccatcaatattttcaacaaaataacgaaatatcacaatgaaaagagtaaatagtcattttagcgcactatcatt |
491 |
Q |
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| T |
2120318 |
gataggatgctgccataattaccgatccatcaatattttcaacaaaataacgaaatattacaatgaaaagagtaaatagtcattttagcgcactatcatt |
2120219 |
T |
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| Q |
492 |
atagtccacgaacgtgtcatttggattacacgcacgtgccactgttattgatttcaacggctcgatcttgaatcaatgatcgggctcgttagtgaaggtg |
591 |
Q |
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| T |
2120218 |
atagtccacgaacgtgtcatttggattacacgcacgtgccactgttattgatttcaaccgctcgatcttgaatcaatgatcgggctcgttagtgaaggtg |
2120119 |
T |
|
| Q |
592 |
taatctgaaccaaccaatctcaaatcgatgggtgaaatcaaatacagcgtttaaatgtggaatctttttacagcattgcaactaggtactcagattacat |
691 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2120118 |
taatctgaaccaaccaatctcaaatcgatgggtgaaatcaaatacagcgtttaaatgtggaatctttttacagcattgcaactaggttctcagattacat |
2120019 |
T |
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| Q |
692 |
aagcatcttcaagggtgtctttt |
714 |
Q |
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| T |
2120018 |
aagcatcttcaagggtgtctttt |
2119996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 2120710 - 2120388
Alignment:
| Q |
1 |
catccaaagatttgtgtatatatgcaacagaataaaatgaa-tgatttcgtttactccaatcaagcatcaattcaggnnnnnnnnnnnnngaggacctgc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2120710 |
catccaaagatttgtgtatatatgcaacagaataaaatgaaatgatttcgtttactccaatcaagcatcaattcaggaaaaagaaaaaaagaggacctgc |
2120611 |
T |
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| Q |
100 |
aaacagaggtagtacgaacatccatccaaacaagcgcattgtgaagaggagcaccggtggatttgctccaaacaagagtggtctctctttgattggtgag |
199 |
Q |
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| T |
2120610 |
aaacagaggtagtacgaacatccatccaaacaagcgcattgtgaagaggagcgccggtggatttgctccaaacaagagtggtctctctttgattggtgag |
2120511 |
T |
|
| Q |
200 |
accaatagccttcaatcctttgtccacgttgaacccgtcagctgttgccttatccactgccttagtaatacaaaccttcacgctctccaatatctccatt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2120510 |
accaatagccttcaatcctttgtccacgttgaacccgttagctgttgccttatccactgccttagtaatacaaaccttcacgctctccaatatctccatt |
2120411 |
T |
|
| Q |
300 |
ggattatgctccacccatctgtt |
322 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
2120410 |
ggattatgctccacccatctgtt |
2120388 |
T |
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