View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_high_14 (Length: 262)
Name: NF3675_high_14
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 35 - 244
Target Start/End: Original strand, 8451377 - 8451586
Alignment:
| Q |
35 |
ttttgatggggtaggggatgtaatggaacaaatagacataggaaattggaatgatgaattagaaggcatggaagaacaagctgaagctagagaggaaacc |
134 |
Q |
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| T |
8451377 |
ttttgatggggtaggggatgtaatggaacaaatagatataggaaattggaatgatgaattagaaggcatggaagaacaagctgaagctagagaggaaacc |
8451476 |
T |
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| Q |
135 |
ataccaaagttaagagccaaaaggaatgctattcataagtaagcattatcaacaatataagtagaatttctcaaccttcaccatagggacaaggtaatct |
234 |
Q |
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| T |
8451477 |
ataccaaagttaagagccaaaaggaatgctattcataagtaagcattatcaacaatataagtagaatttctcaaccttcaccatagggacaaggtaatct |
8451576 |
T |
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| Q |
235 |
agtgctacct |
244 |
Q |
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|||||||||| |
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| T |
8451577 |
agtgctacct |
8451586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 8427753 - 8427670
Alignment:
| Q |
35 |
ttttgatggggtaggggatgtaatggaacaaatagacataggaaattggaatgatgaattag-aaggcatggaagaacaagctg |
117 |
Q |
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| T |
8427753 |
ttttgatggggtaggggatgtaatggaacaaatagatataggaaattggaatgatgaattagaaaggcatggaagaacaagctg |
8427670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 8480025 - 8479957
Alignment:
| Q |
172 |
agtaagcattatcaacaatataagtagaatttctcaaccttcaccatagggacaaggtaatctagtgct |
240 |
Q |
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| T |
8480025 |
agtaaacattatcaacaacataagtagaatttctcaaccttcaccatagggacaagataatccagtgct |
8479957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 8411941 - 8411975
Alignment:
| Q |
199 |
aatttctcaaccttcaccatagggacaaggtaatc |
233 |
Q |
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| T |
8411941 |
aatttctcaaccttcaccatagagacaaggtaatc |
8411975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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