View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_high_15 (Length: 250)
Name: NF3675_high_15
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 812769 - 813005
Alignment:
| Q |
1 |
ttatttattacaaaatcaaaatagttctttgactgcgcaagagggagaagattgaagaaggtaatggaaatcaaattcattttacttacaacatgacatg |
100 |
Q |
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| T |
812769 |
ttatttattacaaaatcaaaatagttctttgactgcgcaagagggagaagat-gaagaaggtaatggaaatcaaattcattttacttacaacatgacatg |
812867 |
T |
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| Q |
101 |
aaaaacacaaaaatgaaattgtaagtttgaaacccacaa-tcattcatnnnnnnntcaaataaattgagatttgacaagatcaaaacacaacccaattaa |
199 |
Q |
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| T |
812868 |
aaaaacacaaaaatcaaattgtaagtttgaaacccacaaatcattgataaaaaaatcaaataaattgagatttgacaagatgaaaacacaacccaattaa |
812967 |
T |
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| Q |
200 |
acatgttgaagatatgaaaaagaaatgaagttaaccct |
237 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
812968 |
acatgttgaagatatgaaaaagaaatgaagctaaccct |
813005 |
T |
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