View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_high_17 (Length: 246)
Name: NF3675_high_17
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 34147334 - 34147549
Alignment:
| Q |
14 |
agaacatggtggtttgcgagagtgagtcgttacctcatgagcgcaaattgtgtactatattatcactctttaaaagtaattttatggcctttaaagaaaa |
113 |
Q |
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| T |
34147334 |
agaacatggtggtttgcgagagtgagtcgttacctcatgagcgcaaattgtgtactatattatcactctttaaaagtaattttatggccttaaaagaaaa |
34147433 |
T |
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| Q |
114 |
tttaaatgtcatgtagttggaaaataaattctaaaattatcgttaaattaatatgaaaaatagatagtagttttttattaggggatgaaatagagatagt |
213 |
Q |
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| T |
34147434 |
tttaaatgtcatgtagttggaaaataaattctaaaattatcgttaaattattatgaaaaatagatagtagttttttattaggggatgaaatagagatagt |
34147533 |
T |
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| Q |
214 |
tgatatcttccataag |
229 |
Q |
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| T |
34147534 |
tgatatcttccataag |
34147549 |
T |
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