View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3675_high_2 (Length: 721)
Name: NF3675_high_2
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-154; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 29462419 - 29462758
Alignment:
| Q |
20 |
gtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgattgagggaattgttaatatcatcattggttaacaatattgtagcttcg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29462419 |
gtaagctgatgatgctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatcattggttaacaatattgtagcttca |
29462518 |
T |
|
| Q |
120 |
attatagacacataggtaagaattacaacaatcccagaaagaagaagaatatttcgtgccatgactatagtttgtatatttgcttcatttcaaccaaggt |
219 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29462519 |
attatagccacataggtaagaattacaacaatcccagaaagaagaagaatatttcgtgccatgact----tttgtatatttgcttcatttcaaccaaggt |
29462614 |
T |
|
| Q |
220 |
tgcgtagcttgggcccttataaataatatagtggaacttaattatgtgtgctgttaaactcaaatagttaaagaataattaagatcactctcaagannnn |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29462615 |
tgcgtagcttgggcccttataaataatatagtggaacttaattatttgtgctgttaaactcaaatagttaaagaataattaagatcactctcaaga-ttt |
29462713 |
T |
|
| Q |
320 |
nnnnnnaattaagatcaataattggccgaaggcagagattatata |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29462714 |
ttttttaattaagatcaataattggccgaaggcagagattatata |
29462758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 359 - 498
Target Start/End: Original strand, 29462783 - 29462921
Alignment:
| Q |
359 |
tatatatcatgtgactgggcccttacattacgattttatatattcccactcatttttgtcaaaaaaggtattgaacttaaacgaacaaaataatattata |
458 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29462783 |
tatatatcatgtgactgggcc-ttacaatacgattttatatattcccactcatttttgtcaaaaaaggtattgaacttaaacgaacaaaataatattata |
29462881 |
T |
|
| Q |
459 |
ccaacatttcttaccaaaatgaacaaaatatatcacgaca |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29462882 |
ccaacatttcttaccaaaatgaacaaaatatatcacgaca |
29462921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 29420904 - 29420686
Alignment:
| Q |
20 |
gtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgattgagggaattgttaatatcatcattggttaacaatattgtagcttcg |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29420904 |
gtaagctgatgaagctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatcattggttaacaatattgtagcttca |
29420805 |
T |
|
| Q |
120 |
attatagacacataggtaagaattacaacaatcccagaaagaagaagaatatttcgtgccatgactatagtttgtatatttgcttcatttcaaccaaggt |
219 |
Q |
| |
|
||||||| |||| | ||||||| ||||| || | | |||||||||| |||| | ||||||||||||||| |||||||| ||| ||||| |||| | |
|
|
| T |
29420804 |
attatagccacacaactaagaatcacaacgattcttgggagaagaagaagatttaataccatgactatagtttatatatttg-ttcctttcagccaa-at |
29420707 |
T |
|
| Q |
220 |
tgcgtagcttgggcccttata |
240 |
Q |
| |
|
|| |||||||||||| ||||| |
|
|
| T |
29420706 |
tgtgtagcttgggccattata |
29420686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 606 - 719
Target Start/End: Original strand, 29463373 - 29463485
Alignment:
| Q |
606 |
aaacggctcatataatgatactcaatgtgttggtcgcttaggaatcatttgaaaaggtgttccattatgcatcagtttacccttcaaggaaagtaggata |
705 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29463373 |
aaacagctcatataat-atactcaatgtgttggtcgcttaggaatcatttgaaaaggtgttccattatgcatcagtttacccttcaagtaaagtaggata |
29463471 |
T |
|
| Q |
706 |
cctatgatactgca |
719 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
29463472 |
cctatgataatgca |
29463485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 496 - 573
Target Start/End: Original strand, 29462955 - 29463031
Alignment:
| Q |
496 |
acatttggcttcttaaaaaagaataactttctctccggttagtcctttcatcaaaggatgaactaagtttttaagagt |
573 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29462955 |
acatttggcttcttaaaaaagaataa-tttctctccggttagtcctttcatcaaaggatgaactaagtttttaagagt |
29463031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 29608038 - 29607935
Alignment:
| Q |
136 |
taagaattacaacaatcccagaaagaagaagaatatttcgtgccatgactatagtttgtatatttgcttcatttcaaccaaggttgcgtagcttgggccc |
235 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
29608038 |
taagaatcacaacaactcctgaaagaagaagaatatttaatgccatgactatagttcgtatatttgcttca-ttcaaccaaagttgcgtagcttgggccc |
29607940 |
T |
|
| Q |
236 |
ttata |
240 |
Q |
| |
|
||||| |
|
|
| T |
29607939 |
ttata |
29607935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 29404589 - 29404531
Alignment:
| Q |
20 |
gtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgattgaggg |
78 |
Q |
| |
|
||||||||| || |||||||||||||| ||||| ||||| |||||||| || ||||||| |
|
|
| T |
29404589 |
gtaagctgaagaagctgttccaaaaatgaaaccatctggaaaactactccggttgaggg |
29404531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 8089032 - 8088979
Alignment:
| Q |
20 |
gtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgatt |
73 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||||||||||||| ||| |||| |
|
|
| T |
8089032 |
gtaagctgaagatgctgttccaaaaacaaaatcttctgggaaactgctttgatt |
8088979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 566
Target Start/End: Original strand, 32011650 - 32011695
Alignment:
| Q |
521 |
actttctctccggttagtcctttcatcaaaggatgaactaagtttt |
566 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| | ||||||||| |
|
|
| T |
32011650 |
actttctctctgtttagtcctttcatcaaaggatcagctaagtttt |
32011695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 566
Target Start/End: Complemental strand, 37408559 - 37408514
Alignment:
| Q |
521 |
actttctctccggttagtcctttcatcaaaggatgaactaagtttt |
566 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||| ||||||||||| |
|
|
| T |
37408559 |
actttctctctgtttagtcctttcgtcaaaggatcaactaagtttt |
37408514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University