View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_high_21 (Length: 220)
Name: NF3675_high_21
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 1552157 - 1552328
Alignment:
| Q |
32 |
caaatcttccaaaagaacaacggaagtcgctgatggtttatactttacctgatgagtgttgggaatttattttcaaatttataatcctcgaaggcgatga |
131 |
Q |
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| T |
1552157 |
caaatcttgcaaaagaacaacggaagtcgctgatggtttatactt-acctcatgagtgttgggaatttattttcaaatttatcatcatctaaggcgatga |
1552255 |
T |
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| Q |
132 |
catcaacaactgtcgctatttgaagtctttatcccttgtctccaaacagttcctctctatcaccgaccgtctc |
204 |
Q |
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| T |
1552256 |
catcaacaaacttcgctatttgaagtctttatccctcgtctccaaacagttcccctctatcaccgaccgtctc |
1552328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 75 - 204
Target Start/End: Original strand, 1547375 - 1547504
Alignment:
| Q |
75 |
tttacctgatgagtgttgggaatttattttcaaatttataatcctcgaaggcgatgacatcaacaactgtcgctatttgaagtctttatcccttgtctcc |
174 |
Q |
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| T |
1547375 |
tttacctgacgagtgttgggaatctatcttcaaattcatcatcatcgacggtgacaacatcaacaatcgtggctacttgaagtcattatcccttgtctcc |
1547474 |
T |
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| Q |
175 |
aaacagttcctctctatcaccgaccgtctc |
204 |
Q |
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| T |
1547475 |
aaacaattcctctccatcaccaaccgtctc |
1547504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 10168807 - 10168851
Alignment:
| Q |
151 |
ttgaagtctttatcccttgtctccaaacagttcctctctatcacc |
195 |
Q |
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| T |
10168807 |
ttgaattctctatcccttgtctccaaacagttcctctccatcacc |
10168851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 10176332 - 10176376
Alignment:
| Q |
151 |
ttgaagtctttatcccttgtctccaaacagttcctctctatcacc |
195 |
Q |
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| T |
10176332 |
ttgaattctctatcccttgtctccaaacagttcctctccatcacc |
10176376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 10616244 - 10616205
Alignment:
| Q |
75 |
tttacctgatgagtgttgggaatttattttcaaatttata |
114 |
Q |
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| T |
10616244 |
tttacctgatgagtgttgggaatgtatcttcaaatttata |
10616205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 17206028 - 17205973
Alignment:
| Q |
143 |
gtcgctatttgaagtctttatcccttgtctccaaacagttcctctctatcaccgac |
198 |
Q |
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| T |
17206028 |
gtcgctacttaaattctctatccctcgtctccaaacagttactctctatcaccgac |
17205973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 7993303 - 7993356
Alignment:
| Q |
151 |
ttgaagtctttatcccttgtctccaaacagttcctctctatcaccgaccgtctc |
204 |
Q |
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| T |
7993303 |
ttgaattctttatctctcgtctccaaacagttcctctccatcaccagccgtctc |
7993356 |
T |
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