View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_high_4 (Length: 485)
Name: NF3675_high_4
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 48755137 - 48754837
Alignment:
| Q |
1 |
tatgataaataccaaaagcattaagcattagaagaaaattcaaatcaatttcatcaatatataaactcggacaagtacaaaatgatctgtacaaaagagt |
100 |
Q |
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| T |
48755137 |
tatgataaataccaaaagcattaagcattagaagaaaattcaaatcaatttcatcaatatataaactcggacaagtacaaaatgatttgtacaaaagagt |
48755038 |
T |
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| Q |
101 |
aaaaacatttactcttagataagtaaataaattacgaccaatctttagaaaagtatggtccacaatccatagccacattaaaaactaaaagactccaaaa |
200 |
Q |
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| T |
48755037 |
aaaaacatttactcttagataagtaaataaattacgaccaatctttagaaaagtatggtccacaatccatagtcacattaaaaactaaaagactccaaaa |
48754938 |
T |
|
| Q |
201 |
atagtaacaaaagtatggtccaaaatccagagcaacagtaaaacccattcaaaattagtaaataacaagttttgcataataatccgaacaataacatgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| |
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| T |
48754937 |
atagtaacaaaagtatggtccaaaatccagagcaacggtaaaacccattcaaaattagtaaataaaaaggtttgcataataatccgaaaaataacatgat |
48754838 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
48754837 |
t |
48754837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 372 - 470
Target Start/End: Complemental strand, 48754766 - 48754668
Alignment:
| Q |
372 |
cagaggcaacctcttaaatggccttttctgagtcattcaaggtgtttcagggctttgatccccatattgagcttcagacaattaactgttctaatttgt |
470 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48754766 |
cagaggcaacctcttaaatggccttttctgagtcattcaaggtgtttcagggctttgatccccatattgagcttcagacaattaactgttctaatttgt |
48754668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 44453206 - 44453160
Alignment:
| Q |
88 |
tgtacaaaagagtaaaaacatttactcttagataagtaaataaatta |
134 |
Q |
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|||| |||||| ||||||||||| |||||| |||||||||||||||| |
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| T |
44453206 |
tgtaaaaaagaataaaaacattttctcttaaataagtaaataaatta |
44453160 |
T |
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