View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_high_9 (Length: 348)
Name: NF3675_high_9
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_high_9 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 51804409 - 51804642
Alignment:
| Q |
13 |
aatatcagaaaactttgaaatatatcgagcaggcaatttctcaagcaagcttagatgaatataacaagtccactattagagcataacataaagaatttaa |
112 |
Q |
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| T |
51804409 |
aatatcagaaaactttcaaatatatcgagcaggcaatttctcaagcatgcttagatgaatagaacaagtccactcttagagcataacataaagaatttaa |
51804508 |
T |
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| Q |
113 |
gatataacttacaagagatgacatacaacaagcaatggaatgacagatgtaattgaacgtatgctttgaaa-gagggactttgtggac--aactcctcat |
209 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| ||| || ||| |||||| |
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| T |
51804509 |
gatataacttactagagatgacatacaacaagcaatgatatgacagatgtaattgaagatatgctttgaaacgagggacttcgtgaacaaaacacctcat |
51804608 |
T |
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| Q |
210 |
cacagttttggcttcattgatattagctcggatg |
243 |
Q |
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| T |
51804609 |
catagttttggtttcattgatattagctcggatg |
51804642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 51804681 - 51804758
Alignment:
| Q |
241 |
atgcaagagatcatttggcatgtgctttgtaaccccaagcagtggctgttaatgacaacaagaccattcttgtagaag |
318 |
Q |
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| T |
51804681 |
atgcaagagatcatttggcatgtgctttgtaaccccaagcagtggctgttaatgacaacaagaccattcttttagaag |
51804758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 51808358 - 51808472
Alignment:
| Q |
13 |
aatatcagaaaactttgaaatatatcgagcaggcaatttctcaagcaagcttagatgaatataacaagtccactattagagcataa-cataaagaattta |
111 |
Q |
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| T |
51808358 |
aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaagagtagatgaatataacaagtccactattagtgcataataacaaagaattta |
51808457 |
T |
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| Q |
112 |
agatataacttacaa |
126 |
Q |
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| T |
51808458 |
agatataacatacaa |
51808472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 51780640 - 51780684
Alignment:
| Q |
13 |
aatatcagaaaactttgaaatatatcgagcaggcaatttctcaag |
57 |
Q |
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| T |
51780640 |
aatatcagaaaactttcaaatatctcgagcaggcaatttcacaag |
51780684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 51768157 - 51768201
Alignment:
| Q |
13 |
aatatcagaaaactttgaaatatatcgagcaggcaatttctcaag |
57 |
Q |
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| T |
51768157 |
aatatcagaaaactttcaaatatatcgaaaaggcgatttctcaag |
51768201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 7284 - 7332
Alignment:
| Q |
13 |
aatatcagaaaactttgaaatatatcgagcaggcaatttctcaagcaag |
61 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||| |||| |
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| T |
7284 |
aatatcagaaaactttcaaatatctcgagcaggcaatttctcaatcaag |
7332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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