View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3675_low_10 (Length: 364)

Name: NF3675_low_10
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3675_low_10
NF3675_low_10
[»] chr6 (16 HSPs)
chr6 (1-297)||(10727824-10728120)
chr6 (298-345)||(10770729-10770776)
chr6 (300-345)||(16833267-16833312)
chr6 (307-345)||(12696290-12696328)
chr6 (306-345)||(426569-426609)
chr6 (313-345)||(8777028-8777060)
chr6 (298-345)||(34595090-34595138)
chr6 (314-345)||(9027151-9027182)
chr6 (316-345)||(8365574-8365603)
chr6 (316-345)||(9658854-9658883)
chr6 (317-345)||(3398595-3398623)
chr6 (298-345)||(5626751-5626798)
chr6 (301-345)||(13789114-13789158)
chr6 (301-345)||(13797733-13797777)
chr6 (298-338)||(33700841-33700881)
chr6 (297-336)||(34073411-34073451)
[»] chr2 (11 HSPs)
chr2 (297-345)||(30404905-30404953)
chr2 (230-293)||(36518260-36518323)
chr2 (298-345)||(18841068-18841115)
chr2 (297-345)||(36409682-36409730)
chr2 (297-327)||(24009264-24009294)
chr2 (298-344)||(27286348-27286394)
chr2 (297-344)||(37419703-37419746)
chr2 (298-347)||(18589155-18589204)
chr2 (299-345)||(38117214-38117261)
chr2 (306-338)||(12940997-12941029)
chr2 (313-345)||(28596444-28596476)
[»] chr3 (13 HSPs)
chr3 (298-344)||(26492261-26492307)
chr3 (298-345)||(14979138-14979185)
chr3 (297-331)||(40993399-40993433)
chr3 (314-345)||(10335341-10335372)
chr3 (314-345)||(24205096-24205127)
chr3 (302-345)||(10954911-10954956)
chr3 (143-189)||(29287095-29287141)
chr3 (298-331)||(40052295-40052328)
chr3 (5-42)||(47820179-47820216)
chr3 (313-345)||(2620108-2620140)
chr3 (298-345)||(9799994-9800044)
chr3 (299-331)||(20503429-20503461)
chr3 (298-341)||(41961709-41961753)
[»] chr8 (10 HSPs)
chr8 (299-344)||(20873027-20873072)
chr8 (293-345)||(17751627-17751679)
chr8 (293-345)||(17760614-17760666)
chr8 (298-345)||(18170537-18170585)
chr8 (298-345)||(18634105-18634153)
chr8 (314-345)||(22651949-22651980)
chr8 (298-337)||(27067364-27067403)
chr8 (314-345)||(29510359-29510390)
chr8 (314-346)||(926842-926874)
chr8 (299-347)||(29775994-29776042)
[»] chr4 (7 HSPs)
chr4 (2-62)||(8324402-8324462)
chr4 (299-341)||(12797396-12797438)
chr4 (297-345)||(49430981-49431029)
chr4 (300-345)||(35723440-35723484)
chr4 (149-186)||(41029688-41029725)
chr4 (143-191)||(29083182-29083230)
chr4 (17-45)||(37035537-37035565)
[»] chr1 (12 HSPs)
chr1 (298-345)||(14359576-14359623)
chr1 (298-345)||(48450642-48450689)
chr1 (297-337)||(17778513-17778553)
chr1 (298-345)||(19058911-19058959)
chr1 (298-345)||(36878417-36878465)
chr1 (314-345)||(398820-398851)
chr1 (298-345)||(5898321-5898368)
chr1 (299-342)||(23636107-23636150)
chr1 (298-345)||(28273143-28273190)
chr1 (314-345)||(48040517-48040548)
chr1 (313-345)||(2896176-2896208)
chr1 (298-345)||(40917707-40917755)
[»] chr7 (10 HSPs)
chr7 (307-345)||(24105644-24105682)
chr7 (302-345)||(11722153-11722197)
chr7 (298-337)||(11700768-11700807)
chr7 (299-345)||(15902780-15902826)
chr7 (297-341)||(12289069-12289113)
chr7 (314-345)||(27945014-27945045)
chr7 (299-345)||(43249950-43249997)
chr7 (300-346)||(28401102-28401148)
chr7 (298-345)||(4017849-4017897)
chr7 (297-345)||(10042893-10042941)
[»] scaffold0003 (1 HSPs)
scaffold0003 (297-345)||(241549-241598)
[»] chr5 (13 HSPs)
chr5 (299-344)||(6072370-6072415)
chr5 (297-342)||(14422860-14422905)
chr5 (293-345)||(22013359-22013418)
chr5 (298-344)||(4105213-4105260)
chr5 (306-344)||(6326353-6326392)
chr5 (298-344)||(21137645-21137692)
chr5 (314-345)||(21522723-21522754)
chr5 (314-345)||(21533289-21533320)
chr5 (314-345)||(36642817-36642848)
chr5 (298-345)||(2436878-2436926)
chr5 (316-345)||(15410503-15410532)
chr5 (298-331)||(39758243-39758276)
chr5 (317-345)||(19552598-19552626)
[»] scaffold0279 (1 HSPs)
scaffold0279 (298-337)||(17735-17774)
[»] scaffold0053 (1 HSPs)
scaffold0053 (314-345)||(8771-8802)
[»] scaffold0018 (1 HSPs)
scaffold0018 (314-345)||(178874-178905)
[»] scaffold0007 (1 HSPs)
scaffold0007 (314-345)||(225323-225354)
[»] scaffold0171 (1 HSPs)
scaffold0171 (307-345)||(23386-23424)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 10728120 - 10727824
Alignment:
Q  1 tctcatttggcattcaacgatttgggttttatggaaagctagaaacaatttcattttcaacaatggagtgatttcgatgccggagctagtggatgaagta 100  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10728120 tctcatttagcattcaacgatttgggtcttatggaaagctagaaacaatttcattttcaacaatggagtgatttcgatgccggagctagtggatgaagta 10728021  T
Q  101 aaagtgttgtcgtggaggtgggggttaactcggctaacaattccgacatgtttgttttatgaatgatgttggaacccaagagattgcctttgtagttctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10728020 aaagtgttgtcgtggaggtgggggttaactcggctaacaattccgacatgtttgttttatgaatgatgttggaacccaagagattgcctttgtagttctt 10727921  T
Q  201 gagtggggctggtataatgtgcacaggtgcttactggtgttttctgtcttctggtgtgagggttcggctactgtttgtgcagcggttctgtttgtgt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10727920 gagtggggctggtataatgtgcacaggtgcttactggtgttttctgtcttctggtgtgagggttcggctactgtttgtgcagcggttctgtttgtgt 10727824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 10770776 - 10770729
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  10770776 ctatgaagcacggatacggacacgacatggacactgacacgccaacac 10770729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 16833267 - 16833312
Alignment:
Q  300 atgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||    
T  16833267 atgaagcactgatacggacacgacacagacactgacacgccgacac 16833312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 12696290 - 12696328
Alignment:
Q  307 acggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  12696290 acggacacggacacgacacggacactgacacgccgacac 12696328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 426609 - 426569
Alignment:
Q  306 cacggatac-ggacacgacacggacactgacacgccgacac 345  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  426609 cacggataccggacacgacacggacactgacacgccgacac 426569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 8777060 - 8777028
Alignment:
Q  313 acggacacgacacggacactgacacgccgacac 345  Q
    |||||||||||||||||||||||||||||||||    
T  8777060 acggacacgacacggacactgacacgccgacac 8777028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 34595090 - 34595138
Alignment:
Q  298 ctatgaagcacggatac-ggacacgacacggacactgacacgccgacac 345  Q
    |||||||||||||| || |||||||||||||||| ||||||||||||||    
T  34595090 ctatgaagcacggacaccggacacgacacggacaatgacacgccgacac 34595138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 9027151 - 9027182
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  9027151 cggacacgacacggacactgacacgccgacac 9027182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 345
Target Start/End: Complemental strand, 8365603 - 8365574
Alignment:
Q  316 gacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||    
T  8365603 gacacgacacggacactgacacgccgacac 8365574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 345
Target Start/End: Original strand, 9658854 - 9658883
Alignment:
Q  316 gacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||    
T  9658854 gacacgacacggacactgacacgccgacac 9658883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 3398595 - 3398623
Alignment:
Q  317 acacgacacggacactgacacgccgacac 345  Q
    |||||||||||||||||||||||||||||    
T  3398595 acacgacacggacactgacacgccgacac 3398623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 5626798 - 5626751
Alignment:
Q  298 ctatgaagcacggatacggacac-gacacggacactgacacgccgacac 345  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  5626798 ctatgcagcacggatacggacacggacac-gacactgacacgccgacac 5626751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 13789114 - 13789158
Alignment:
Q  301 tgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||||||| ||||||||||||||||||||  |||||| ||||||    
T  13789114 tgaagcacgaatacggacacgacacggacatcgacacgtcgacac 13789158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 13797733 - 13797777
Alignment:
Q  301 tgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||||||| ||||||||||||||||||||  |||||| ||||||    
T  13797733 tgaagcacgaatacggacacgacacggacatcgacacgtcgacac 13797777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 33700881 - 33700841
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacacg 338  Q
    |||||||||||  ||||||||||||||| ||||||||||||    
T  33700881 ctatgaagcactaatacggacacgacactgacactgacacg 33700841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 34073451 - 34073411
Alignment:
Q  297 tctatgaagcacggatac-ggacacgacacggacactgaca 336  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  34073451 tctatgaagcacggacactggacacgacacggacactgaca 34073411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 30404953 - 30404905
Alignment:
Q  297 tctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30404953 tctatgaagcacggatacggacatgacacggacactgacacgccgacac 30404905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 36518260 - 36518323
Alignment:
Q  230 cttactggtgttttctgtcttctggtgtgagggttcggctactgtttgtgcagcggttctgttt 293  Q
    |||||||||||||  ||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  36518260 cttactggtgtttcatgttttctggtgtgagggttcggctgctgtttgtgcagtggttctgttt 36518323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 18841115 - 18841068
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||||    
T  18841115 ctatgaagcacgtatacggacacgacatggacactgacacgctgacac 18841068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 36409730 - 36409682
Alignment:
Q  297 tctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    |||||||||||||||||| ||||||||||||| ||| ||| ||||||||    
T  36409730 tctatgaagcacggatacagacacgacacggatactcacatgccgacac 36409682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 327
Target Start/End: Original strand, 24009264 - 24009294
Alignment:
Q  297 tctatgaagcacggatacggacacgacacgg 327  Q
    |||||||||||||||||||||||||||||||    
T  24009264 tctatgaagcacggatacggacacgacacgg 24009294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 27286394 - 27286348
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacacgccgaca 344  Q
    |||||||||||||| || ||||||| ||||||||||| |||||||||    
T  27286394 ctatgaagcacggacacagacacgatacggacactgatacgccgaca 27286348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 344
Target Start/End: Original strand, 37419703 - 37419746
Alignment:
Q  297 tctatgaagcacggatacggacacgacacggacactgacacgccgaca 344  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||    
T  37419703 tctatgaagcacggatacggacac----cggacactgacacgccgaca 37419746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 18589155 - 18589204
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacacgccgacactg 347  Q
    ||||||||||  |||||||||| |||||||| ||| ||||||||||||||    
T  18589155 ctatgaagcatcgatacggacatgacacggatactaacacgccgacactg 18589204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 38117261 - 38117214
Alignment:
Q  299 tatgaagcacggatacggacac--gacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  38117261 tatgaagcacggatacggacaccggacac-gacactgacacgccgacac 38117214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 12941029 - 12940997
Alignment:
Q  306 cacggatacggacacgacacggacactgacacg 338  Q
    ||||||||| |||||||||||||||||||||||    
T  12941029 cacggatacagacacgacacggacactgacacg 12940997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 28596444 - 28596476
Alignment:
Q  313 acggacacgacacggacactgacacgccgacac 345  Q
    |||||||||||||||||| ||||||||||||||    
T  28596444 acggacacgacacggacaatgacacgccgacac 28596476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 26492307 - 26492261
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacacgccgaca 344  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  26492307 ctatgaagcacgaatacggacacgacacggacactgacacgccgaca 26492261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 14979138 - 14979185
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||| ||||| || |||||||||||    
T  14979138 ctatgaagcacggatacggacacgacaaggacaatggcacgccgacac 14979185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 40993433 - 40993399
Alignment:
Q  297 tctatgaagcacggatacggacacgacacggacac 331  Q
    |||||||||||||||||||||||||||||||||||    
T  40993433 tctatgaagcacggatacggacacgacacggacac 40993399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 10335372 - 10335341
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  10335372 cggacacgacacggacactgacacgccgacac 10335341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 24205127 - 24205096
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  24205127 cggacacgacacggacactgacacgccgacac 24205096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 345
Target Start/End: Original strand, 10954911 - 10954956
Alignment:
Q  302 gaagcacggatacggacac--gacacggacactgacacgccgacac 345  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||    
T  10954911 gaagcacggatacggacaccggacacgaacactgacacgccgacac 10954956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 29287095 - 29287141
Alignment:
Q  143 ccgacatgtttgttttatgaatgatgttggaacccaagagattgcct 189  Q
    |||||||||||||||||||||||| ||||||| ||||| || |||||    
T  29287095 ccgacatgtttgttttatgaatgaagttggaatccaagggactgcct 29287141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 40052295 - 40052328
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacac 331  Q
    |||||||||||||||||||||||||||| |||||    
T  40052295 ctatgaagcacggatacggacacgacactgacac 40052328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 47820179 - 47820216
Alignment:
Q  5 atttggcattcaacgatttgggttttatggaaagctag 42  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  47820179 atttggcatgcgacgatttgggttttatggaaagctag 47820216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 2620140 - 2620108
Alignment:
Q  313 acggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||| |||||||||||||||||||||    
T  2620140 acggacacgactcggacactgacacgccgacac 2620108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 9799994 - 9800044
Alignment:
Q  298 ctatgaagcacggatac---ggacacgacacggacactgacacgccgacac 345  Q
    ||||||| |||||||||   |||||||||||| ||||||||||||||||||    
T  9799994 ctatgaaacacggatacaaaggacacgacacgtacactgacacgccgacac 9800044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 20503429 - 20503461
Alignment:
Q  299 tatgaagcacggatacggacacgacacggacac 331  Q
    ||||||||||||||||||||||||||| |||||    
T  20503429 tatgaagcacggatacggacacgacactgacac 20503461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 41961753 - 41961709
Alignment:
Q  298 ctatgaagcacggatac-ggacacgacacggacactgacacgccg 341  Q
    |||||||||||||| || ||||||||||| |||||||||||||||    
T  41961753 ctatgaagcacggacaccggacacgacacagacactgacacgccg 41961709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 20873027 - 20873072
Alignment:
Q  299 tatgaagcacggatacggacacgacacggacactgacacgccgaca 344  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  20873027 tatgaagcacgaatacggacacgacacggacactgacacgccgaca 20873072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 17751627 - 17751679
Alignment:
Q  293 tgtgtctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||| ||||||||| ||||||  |||| ||||||||||||||||||||||||    
T  17751627 tgtgtgtatgaagcatggatacatacacaacacggacactgacacgccgacac 17751679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 17760614 - 17760666
Alignment:
Q  293 tgtgtctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||| ||||||||| ||||||  |||| ||||||||||||||||||||||||    
T  17760614 tgtgtgtatgaagcatggatacatacacaacacggacactgacacgccgacac 17760666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 18170585 - 18170537
Alignment:
Q  298 ctatgaagcacggatac-ggacacgacacggacactgacacgccgacac 345  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||||    
T  18170585 ctatgatgcacggataccggtcacgacacggacactgacacgccgacac 18170537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 18634153 - 18634105
Alignment:
Q  298 ctatgaagcacggatac-ggacacgacacggacactgacacgccgacac 345  Q
    |||||| |||||||||| || ||||||||||||||||||||||||||||    
T  18634153 ctatgatgcacggataccggtcacgacacggacactgacacgccgacac 18634105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 22651949 - 22651980
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  22651949 cggacacgacacggacactgacacgccgacac 22651980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 337
Target Start/End: Complemental strand, 27067403 - 27067364
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacac 337  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  27067403 ctatgaagcacggatacggacacgacacagtcactgacac 27067364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 29510390 - 29510359
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  29510390 cggacacgacacggacactgacacgccgacac 29510359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 926874 - 926842
Alignment:
Q  314 cggacacgacacggacactgacacgccgacact 346  Q
    ||||||||||||||||||||||||||| |||||    
T  926874 cggacacgacacggacactgacacgccaacact 926842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 29775994 - 29776042
Alignment:
Q  299 tatgaagcacggatacggacacgacacggacactgacacgccgacactg 347  Q
    ||||||||||| |||||| ||||||||||||| ||||| | ||||||||    
T  29775994 tatgaagcacgaatacggtcacgacacggacattgacaagtcgacactg 29776042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 8324462 - 8324402
Alignment:
Q  2 ctcatttggcattcaacgatttgggttttatggaaagctagaaacaatttcattttcaaca 62  Q
    |||||||| |||||||||||||||||  ||||||||| ||||||||||| |||||||||||    
T  8324462 ctcatttgacattcaacgatttgggtcatatggaaagttagaaacaattgcattttcaaca 8324402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 12797438 - 12797396
Alignment:
Q  299 tatgaagcacggatacggacacgacacggacactgacacgccg 341  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  12797438 tatgaagcacggatacggatacgacacggacactgacacgccg 12797396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 49430981 - 49431029
Alignment:
Q  297 tctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  49430981 tctatgaagcacggacacggacacgactcggacagtgacacgccgacac 49431029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 35723484 - 35723440
Alignment:
Q  300 atgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||    
T  35723484 atgaagcaccgatacggacacgaca-tgacactgacacgccgacac 35723440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 41029688 - 41029725
Alignment:
Q  149 tgtttgttttatgaatgatgttggaacccaagagattg 186  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  41029688 tgtttgttttatgaatggtgttggaacccaaaagattg 41029725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 29083182 - 29083230
Alignment:
Q  143 ccgacatgtttgttttatgaatgatgttggaacccaagagattgccttt 191  Q
    ||||| || |||||||||||||| ||||||||||||| ||| |||||||    
T  29083182 ccgacttgcttgttttatgaatggtgttggaacccaaaagaatgccttt 29083230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 37035537 - 37035565
Alignment:
Q  17 acgatttgggttttatggaaagctagaaa 45  Q
    |||||||||||||||||||||||||||||    
T  37035537 acgatttgggttttatggaaagctagaaa 37035565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 14359623 - 14359576
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||    
T  14359623 ctatgaagcacggatacggacacgacacagacacggacacgccgacac 14359576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 48450689 - 48450642
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||    
T  48450689 ctatgaagcatggatacggacacgacacggacactgacacgccaacac 48450642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 17778513 - 17778553
Alignment:
Q  297 tctatgaagcacggatacggacacgacacggacactgacac 337  Q
    |||||||||||||||||||||||||||||||| || |||||    
T  17778513 tctatgaagcacggatacggacacgacacggagacagacac 17778553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 19058959 - 19058911
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacac-tgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||  |||| ||||||||||||||    
T  19058959 ctatgaagcacggatacggacacgacacacacacttgacacgccgacac 19058911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 36878417 - 36878465
Alignment:
Q  298 ctatgaagcacggatacggacac-gacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||||||    
T  36878417 ctatgaagcacggatacggacacggacatagacactgacacgccgacac 36878465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 398851 - 398820
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  398851 cggacacgacacggacactgacacgccgacac 398820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 5898368 - 5898321
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||| |||||||||||||||| ||||| |||||||| ||||||||||    
T  5898368 ctatgtagcacggatacggacatgacacagacactgagacgccgacac 5898321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 23636150 - 23636107
Alignment:
Q  299 tatgaagcacggatacggacacgacacggacactgacacgccga 342  Q
    |||||||||| |||||| |||||||||||||| |||||||||||    
T  23636150 tatgaagcacagatacgcacacgacacggacattgacacgccga 23636107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 28273190 - 28273143
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    |||||||||||||||||||||| |||| ||||||||||| || |||||    
T  28273190 ctatgaagcacggatacggacatgacaaggacactgacatgctgacac 28273143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 48040548 - 48040517
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  48040548 cggacacgacacggacactgacacgccgacac 48040517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 2896208 - 2896176
Alignment:
Q  313 acggacacgacacggacactgacacgccgacac 345  Q
    |||||||| ||||||||||||||||||||||||    
T  2896208 acggacacaacacggacactgacacgccgacac 2896176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 40917707 - 40917755
Alignment:
Q  298 ctatgaagcacggatac-ggacacgacacggacactgacacgccgacac 345  Q
    ||||||| |||||| || |||||||||||||| ||||||||||||||||    
T  40917707 ctatgaaacacggacaccggacacgacacggatactgacacgccgacac 40917755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 24105644 - 24105682
Alignment:
Q  307 acggatacggacacgacacggacactgacacgccgacac 345  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24105644 acggatacggacacgacacggacactgacacgccgacac 24105682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 302 - 345
Target Start/End: Complemental strand, 11722197 - 11722153
Alignment:
Q  302 gaagcacggatac-ggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  11722197 gaagcacggataccggacacgacacggacactgacacgccgacac 11722153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 11700768 - 11700807
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacac 337  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11700768 ctatgaagcacggatacggacacgacacggacgctgacac 11700807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 345
Target Start/End: Original strand, 15902780 - 15902826
Alignment:
Q  299 tatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  15902780 tatgaagcacgaatacggacacgacacagacactgacatgccgacac 15902826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 12289069 - 12289113
Alignment:
Q  297 tctatgaagcacggatacggacacgacacggacactgacacgccg 341  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||    
T  12289069 tctatgaagcacggatacagacacaacacggacaccgacacgccg 12289113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 27945014 - 27945045
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  27945014 cggacacgacacggacactgacacgccgacac 27945045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 345
Target Start/End: Original strand, 43249950 - 43249997
Alignment:
Q  299 tatgaagcacggatac-ggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||| || ||||| |||||||||||||||||||||||||    
T  43249950 tatgaagcacggacaccggacaagacacggacactgacacgccgacac 43249997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 28401102 - 28401148
Alignment:
Q  300 atgaagcacggatacggacacgacacggacactgacacgccgacact 346  Q
    |||||||||||||||||||||||||||| |||  ||||| |||||||    
T  28401102 atgaagcacggatacggacacgacacgggcaccaacacgtcgacact 28401148  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 4017897 - 4017849
Alignment:
Q  298 ctatgaagcacggatac-ggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||| || || ||||||||||||||||| |||||||||||||    
T  4017897 ctatgaagcacagacactggacacgacacggacaccgacacgccgacac 4017849  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 10042893 - 10042941
Alignment:
Q  297 tctatgaagcacggatacggacacgacacggacactgacacgccgacac 345  Q
    |||||||||||  ||||| || |||||||||||||| ||||||||||||    
T  10042893 tctatgaagcaaagataccgatacgacacggacacttacacgccgacac 10042941  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 241549 - 241598
Alignment:
Q  297 tctatgaagcacggatac-ggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||    
T  241549 tctatgaagcacggacaccggacacgacacggacactgacacgccgacac 241598  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 6072415 - 6072370
Alignment:
Q  299 tatgaagcacggatacggacacgacacggacactgacacgccgaca 344  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||||    
T  6072415 tatgaagcacggatatggacacgatacggatactgacacgccgaca 6072370  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 14422860 - 14422905
Alignment:
Q  297 tctatgaagcacggatacggacacgacacggacactgacacgccga 342  Q
    |||||||||||| ||||||||||||||| |||||||||||| ||||    
T  14422860 tctatgaagcacagatacggacacgacaaggacactgacacaccga 14422905  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 22013359 - 22013418
Alignment:
Q  293 tgtgtctatgaagcacggatacgga-------cacgacacggacactgacacgccgacac 345  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  22013359 tgtgtctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacac 22013418  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 4105213 - 4105260
Alignment:
Q  298 ctatgaagcacggatac-ggacacgacacggacactgacacgccgaca 344  Q
    ||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  4105213 ctatgaagcacggataccggacatgacacggatactgacacgccgaca 4105260  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 6326392 - 6326353
Alignment:
Q  306 cacggatac-ggacacgacacggacactgacacgccgaca 344  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  6326392 cacggataccggacacgacacggacactgacacgccgaca 6326353  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 21137645 - 21137692
Alignment:
Q  298 ctatgaagcacggatac-ggacacgacacggacactgacacgccgaca 344  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||    
T  21137645 ctatgaagcacggacaccggacacaacacggacactgacacgccgaca 21137692  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 21522723 - 21522754
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  21522723 cggacacgacacggacactgacacgccgacac 21522754  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 21533289 - 21533320
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  21533289 cggacacgacacggacactgacacgccgacac 21533320  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 36642848 - 36642817
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  36642848 cggacacgacacggacactgacacgccgacac 36642817  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 2436878 - 2436926
Alignment:
Q  298 ctatgaagcacggatacggacac--gacacggacactgacacgccgacac 345  Q
    |||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  2436878 ctatgaagcacggatacggacaccggacac-gacactgacacgccgacac 2436926  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 345
Target Start/End: Complemental strand, 15410532 - 15410503
Alignment:
Q  316 gacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||    
T  15410532 gacacgacacggacactgacacgccgacac 15410503  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 39758243 - 39758276
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacac 331  Q
    ||||||| ||||||||||||||||||||||||||    
T  39758243 ctatgaaacacggatacggacacgacacggacac 39758276  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Complemental strand, 19552626 - 19552598
Alignment:
Q  317 acacgacacggacactgacacgccgacac 345  Q
    |||||||||||||||||||||||||||||    
T  19552626 acacgacacggacactgacacgccgacac 19552598  T

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Target: scaffold0279 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 17735 - 17774
Alignment:
Q  298 ctatgaagcacggatacggacacgacacggacactgacac 337  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  17735 ctatgaagcacagatacggacacgacacggacaccgacac 17774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 8771 - 8802
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  8771 cggacacgacacggacactgacacgccgacac 8802  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 178905 - 178874
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  178905 cggacacgacacggacactgacacgccgacac 178874  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 225354 - 225323
Alignment:
Q  314 cggacacgacacggacactgacacgccgacac 345  Q
    ||||||||||||||||||||||||||||||||    
T  225354 cggacacgacacggacactgacacgccgacac 225323  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 23386 - 23424
Alignment:
Q  307 acggatacggacacgacacggacactgacacgccgacac 345  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  23386 acggacacggacacgacacagacactgacacgccgacac 23424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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