View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_low_21 (Length: 247)
Name: NF3675_low_21
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 52600690 - 52600453
Alignment:
| Q |
1 |
actcaatttgatattatgtaatataatagtaacattggtgcatcatgattaagactttaagaattcaggttatcattgtcaggtcaaaattgtgtatcaa |
100 |
Q |
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| T |
52600690 |
actcaatttgatattatgtaatataatagtaacattggtgcatcatgattaagactttaagaattcaggttctcattgtcaggtcaaaattgtgtatcaa |
52600591 |
T |
|
| Q |
101 |
agtaagtatcattagatttagtacctatattatacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggtggctt |
200 |
Q |
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| T |
52600590 |
agtaagtatcattagatttagtacctatattatacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggtggctt |
52600491 |
T |
|
| Q |
201 |
ttctcaatgtctggaaatcaaagtagctaattgtccta |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
52600490 |
ttctcaatgtctggaaatcaaagtagctaattgtccta |
52600453 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 16912588 - 16912687
Alignment:
| Q |
132 |
atacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggtggcttttctcaatgtctggaaatcaaagtagctaat |
231 |
Q |
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| T |
16912588 |
ataccttatatacaggtccaaatccaccacttccaagaagatttccatgaaagaagttattggttgccttcctcaacgtctggtaatcaaagtagctaat |
16912687 |
T |
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