View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_low_23 (Length: 245)
Name: NF3675_low_23
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 44275541 - 44275605
Alignment:
| Q |
166 |
aagtaggagaaccaacacatatcccaatcttcttgaccctagtataaaatcatacacaaaaattg |
230 |
Q |
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| T |
44275541 |
aagtaggagaaccaacacatatcccaattttcttgactctagtataaaatcatacacaaaaattg |
44275605 |
T |
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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 44275385 - 44275440
Alignment:
| Q |
10 |
attattctaatccagaaaacacataaataaagggcaaaaatgtattaaaatctaac |
65 |
Q |
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| T |
44275385 |
attactctaatccagaaaacacataaataaagggcaaaaatgtattaaaatctaac |
44275440 |
T |
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