View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3675_low_27 (Length: 228)

Name: NF3675_low_27
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3675_low_27
NF3675_low_27
[»] chr7 (1 HSPs)
chr7 (3-220)||(10616150-10616367)
[»] chr3 (2 HSPs)
chr3 (4-219)||(13469053-13469267)
chr3 (124-161)||(51120330-51120367)
[»] chr6 (7 HSPs)
chr6 (1-217)||(6417532-6417750)
chr6 (114-149)||(6427524-6427559)
chr6 (122-161)||(19633437-19633476)
chr6 (124-161)||(9412455-9412492)
chr6 (114-147)||(14810059-14810092)
chr6 (123-176)||(14821700-14821753)
chr6 (115-147)||(7993090-7993122)
[»] chr5 (4 HSPs)
chr5 (120-161)||(32268881-32268922)
chr5 (124-161)||(41886296-41886333)
chr5 (120-161)||(41900187-41900228)
chr5 (124-161)||(29022137-29022174)
[»] chr1 (1 HSPs)
chr1 (114-161)||(33161523-33161570)
[»] chr4 (3 HSPs)
chr4 (124-161)||(1547373-1547410)
chr4 (116-161)||(21832951-21832996)
chr4 (114-159)||(53759957-53760002)
[»] chr2 (1 HSPs)
chr2 (124-161)||(45244526-45244563)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 10616367 - 10616150
Alignment:
Q  3 gccttttcttatacataattccagtgggacaaaacattattttcactgaagagtcaccaccacctgcaacacaatgaaaaggaagataacttctaaccag 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  10616367 gccttttcttatacataattccagtgggacaaaacattattttcactgaagagtcaccaccacctgcaacacaatgaaaaggaagagaacttctatccag 10616268  T
Q  103 tcatcaacgataacaaattcatatttacctgatgagtgttgggaatgtatcttcaaatttatattcaacaacaacgaaaacaacaatcgtcactactttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10616267 tcatcaacgataacaaattcatatttacctgatgagtgttgggaatgtatcttcaaatttatattcaacaacaacgaaaacaacaatcgttactactttt 10616168  T
Q  203 atcctctcaattcttctc 220  Q
    ||||||||||||||||||    
T  10616167 atcctctcaattcttctc 10616150  T

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Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 13469053 - 13469267
Alignment:
Q  4 ccttttcttatacataattccagtgggacaaaacattattttcactgaagagtcaccaccacctgcaacacaatgaaaaggaagataacttctaaccagt 103  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |    
T  13469053 ccttttcttatacataatgccagtgggacaaa-cactattttcactgaagattcaccaccacctgcaacacaatgaaaaggaagagaacttctatccaat 13469151  T
Q  104 catcaacgataacaaattcatatttacctgatgagtgttgggaatgtatcttcaaatttatattcaacaacaacgaaaacaacaatcgtcactactttta 203  Q
    |||| |||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || ||||||||||  ||||||||||||||||    
T  13469152 catcgacgacaacaaattcatatttacctgacgagtgttgggaacgtatcttcaaatttatattcaacgacgacgaaaacaatgatcgtcactactttta 13469251  T
Q  204 tcctctcaattcttct 219  Q
    ||| ||||||||||||    
T  13469252 tccgctcaattcttct 13469267  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 51120330 - 51120367
Alignment:
Q  124 tatttacctgatgagtgttgggaatgtatcttcaaatt 161  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  51120330 tatttacctgatgactgttgggaatgtgtcttcaaatt 51120367  T

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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 6417750 - 6417532
Alignment:
Q  1 ttgccttttcttatacataattccagtgggacaaaacattattttcactgaagagtcaccaccacctgcaacacaa---tgaaaaggaagataacttcta 97  Q
    |||| |||||| ||| | ||| |||| |||||||||  ||||| |||||||||| ||||| | |||||||||||||   |||||||||||| ||||| ||    
T  6417750 ttgcattttctaatatacaatgccagggggacaaaag-ttattatcactgaagattcacctctacctgcaacacaacaatgaaaaggaagagaacttgta 6417652  T
Q  98 accagtcatcaacgataacaaattcatatttacctgatgagtgttgggaatgtatcttcaaatttatattcaacaacaacgaaaacaacaatcgtcacta 197  Q
     ||| |||||||||| |||||||||||||||||| |||||||||||||||  |||||||||||| ||  |||||  | ||||| ||||  ||||||||||    
T  6417651 tccaatcatcaacgacaacaaattcatatttacccgatgagtgttgggaacttatcttcaaattcatcatcaacggcgacgaacacaaagatcgtcacta 6417552  T
Q  198 cttttatcctctcaattctt 217  Q
    ||||||||||||||||||||    
T  6417551 cttttatcctctcaattctt 6417532  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 149
Target Start/End: Complemental strand, 6427559 - 6427524
Alignment:
Q  114 aacaaattcatatttacctgatgagtgttgggaatg 149  Q
    ||||||| ||||||||||||||||||||||||||||    
T  6427559 aacaaatacatatttacctgatgagtgttgggaatg 6427524  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 19633476 - 19633437
Alignment:
Q  122 catatttacctgatgagtgttgggaatgtatcttcaaatt 161  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  19633476 catatttacctgatgagtgttgggaatctatcttcgaatt 19633437  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 9412492 - 9412455
Alignment:
Q  124 tatttacctgatgagtgttgggaatgtatcttcaaatt 161  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  9412492 tatttacctgatgaatgttgggaaagtatcttcaaatt 9412455  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 14810092 - 14810059
Alignment:
Q  114 aacaaattcatatttacctgatgagtgttgggaa 147  Q
    |||| |||||||||||||||||||||||||||||    
T  14810092 aacatattcatatttacctgatgagtgttgggaa 14810059  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 14821753 - 14821700
Alignment:
Q  123 atatttacctgatgagtgttgggaatgtatcttcaaatttatattcaacaacaa 176  Q
    ||||||||| ||||| |||||||||| |||||||||||| ||  ||||||||||    
T  14821753 atatttacccgatgattgttgggaatctatcttcaaattcattatcaacaacaa 14821700  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 7993090 - 7993122
Alignment:
Q  115 acaaattcatatttacctgatgagtgttgggaa 147  Q
    |||| ||||||||||||||||||||||||||||    
T  7993090 acaatttcatatttacctgatgagtgttgggaa 7993122  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 32268922 - 32268881
Alignment:
Q  120 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 161  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  32268922 ttcatatttaccagatgagtgttgggaatgtgtcttcaaatt 32268881  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 41886296 - 41886333
Alignment:
Q  124 tatttacctgatgagtgttgggaatgtatcttcaaatt 161  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaatt 41886333  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 41900187 - 41900228
Alignment:
Q  120 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 161  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  41900187 ttcatatttaccagatgagtgttgggaatgtgtcttcaaatt 41900228  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 29022174 - 29022137
Alignment:
Q  124 tatttacctgatgagtgttgggaatgtatcttcaaatt 161  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  29022174 tatttacctgacgagtgttgggaatgcatcttcaaatt 29022137  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 33161570 - 33161523
Alignment:
Q  114 aacaaattcatatttacctgatgagtgttgggaatgtatcttcaaatt 161  Q
    |||| ||||||||||||| || |||||||||||| |||||||||||||    
T  33161570 aacatattcatatttaccggacgagtgttgggaaagtatcttcaaatt 33161523  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 1547373 - 1547410
Alignment:
Q  124 tatttacctgatgagtgttgggaatgtatcttcaaatt 161  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  1547373 tatttacctgacgagtgttgggaatctatcttcaaatt 1547410  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 21832951 - 21832996
Alignment:
Q  116 caaattcatatttacctgatgagtgttgggaatgtatcttcaaatt 161  Q
    |||||||||| ||||||||||| |||||| |||| |||||||||||    
T  21832951 caaattcatacttacctgatgactgttggaaatgcatcttcaaatt 21832996  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 53759957 - 53760002
Alignment:
Q  114 aacaaattcatatttacctgatgagtgttgggaatgtatcttcaaa 159  Q
    |||| ||||| |||||||||||||||| ||||||| ||||||||||    
T  53759957 aacacattcagatttacctgatgagtgctgggaatctatcttcaaa 53760002  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 45244526 - 45244563
Alignment:
Q  124 tatttacctgatgagtgttgggaatgtatcttcaaatt 161  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  45244526 tatttacctgatgagtgttgggaatgtgtcttgaaatt 45244563  T

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