View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_low_3 (Length: 504)
Name: NF3675_low_3
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 4763998 - 4764188
Alignment:
| Q |
11 |
cataggtgcttatagtattggataagttcaaataagtcaatcgaaacaggtccctatgttcttttttgaataaatgtttgtcaaactcaatttcaacctt |
110 |
Q |
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| T |
4763998 |
cataggtgcttatgctagtggataagttcaaataagtcaatccaaacaggtcccta-gctctttcgtgagtaactgt----caaactcaatttca-cctt |
4764091 |
T |
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| Q |
111 |
ttattttgaatgcaagcagatgctataagggaagaaagtgaccgtcttagacaagcaaacgaagacttgacagaagaaattgagcaactacaagctg |
207 |
Q |
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| T |
4764092 |
ttattttgaatgcaggcagatgctctaagggaagaaagtgaccgtctcagacaagcaaacgaagacttgacgaaggaaattgagcaactaaaagctg |
4764188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 248 - 334
Target Start/End: Original strand, 4764245 - 4764327
Alignment:
| Q |
248 |
agacatgaattaagacactatcaacctgcacctggcaaaacagttgcaagggacttaagcaagcaaaaacttaagtccaactactga |
334 |
Q |
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| T |
4764245 |
agacatgaattaagaaactatcaacctgcacctggcaaaacagttgcaagggactt----aagcaaaaacttaagtccaacttctga |
4764327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 345 - 481
Target Start/End: Original strand, 10085016 - 10085152
Alignment:
| Q |
345 |
gacatagaatggcgaaaacgtcaatttgagtttgagaatcttagtaaatgattcaacaaaatcaacatggaagtttccaaactcaagcgaggtggtgaag |
444 |
Q |
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| T |
10085016 |
gacaaagaatggcgaaaacatcaatttgagttgaagaatcttcgtaaagaattcaacaaaatcaacacggaagtttccaaactcaagcgaggtggtgaag |
10085115 |
T |
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| Q |
445 |
atgcatccgagtttatttctaaatctaaagagattaa |
481 |
Q |
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| T |
10085116 |
atgctgccgagtttatttctaaatctaaagagattaa |
10085152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 435
Target Start/End: Original strand, 36859731 - 36859802
Alignment:
| Q |
364 |
gtcaatttgagtttgagaatcttagtaaatgattcaacaaaatcaacatggaagtttccaaactcaagcgag |
435 |
Q |
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| T |
36859731 |
gtcaattcgagtttgagaatctccgtaaagaagtcaacaaaatcaataaggaagtttccaaactcaagcgag |
36859802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 482
Target Start/End: Original strand, 36859878 - 36859925
Alignment:
| Q |
435 |
ggtggtgaagatgcatccgagtttatttctaaatctaaagagattaag |
482 |
Q |
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| T |
36859878 |
ggtggtgaagatgcaaccgagtttattgctaaatctgaagagattaag |
36859925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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