View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_low_5 (Length: 482)
Name: NF3675_low_5
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_low_5 |
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| [»] scaffold0003 (2 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 5911341 - 5911627
Alignment:
| Q |
1 |
ttcctcctttttgtacgaagctcctctcggttacatcattgaagatgttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5911341 |
ttcctcctttttgtacgaagctcctctcggttacatcattgaagacgttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgta |
5911440 |
T |
|
| Q |
101 |
agttgtttccatttcaatttcaattcctttgattaatgtcaacatt-------atagtttaaaatggttaaatttggctttgttttttaacacccctt-t |
192 |
Q |
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||||||| |||||||||||||||||||||||| |||| | |||||| ||||| ||| || | | | |||||||||||||||||||||| || | |
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| T |
5911441 |
agttgttcccatttcaatttcaattcctttgaataattttaacattatagtagatagtataagattggttgacttggctttgttttttaacaccctttgt |
5911540 |
T |
|
| Q |
193 |
tctttattgtgcagtgcacccgcaaaccatcctgagannnnnnngggttgtgatatagttcttaggtttttcattccgcaaaattatt |
280 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||| |
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| T |
5911541 |
tctttattatgcagtgcacccgcaaaccatcctgaga-ttttttgggttctgatatagttcttaggattttcattctgcaaaattatt |
5911627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 5918004 - 5918296
Alignment:
| Q |
1 |
ttcctcctttttgtacgaagctcctctcggttacatcattgaagatgttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
5918004 |
ttcctcctttttgtacgaagctcctctcggttacatcattgaagacgttcgacccaacggtggcgtagaaaaattcaaatcacctgattactcaaacgta |
5918103 |
T |
|
| Q |
101 |
agtt---gtttccatttcaatttcaattcctttgattaatgtcaacat-------tatagtttaaaatggttaaatttggctttgttttttaacaccc-c |
189 |
Q |
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| || |||| |||||||||| |||||||| ||||||||| ||||| |||||| ||| || | ||||||||||| ||||| |||||| |
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| T |
5918104 |
atttcccatttcaatttcaattttaattccttcgattaatgttaacattatagtatatagtataagattggatgatttggctttgctttttgacaccctt |
5918203 |
T |
|
| Q |
190 |
ttttctttattgtgcagtgcacccgcaaaccatcctgagannnnnnngggttgtgatatagttcttaggtttttcattccgcaaaattattcta |
283 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5918204 |
ttttctttattatgcagtgcacccgcaaaccatcctgaga-ttttctgggcggtgatatagttcttaggtttttcattctgcaaaattattcta |
5918296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 5903861 - 5903574
Alignment:
| Q |
1 |
ttcctcctttttgtacgaagctcctctcggttacatcattgaagatgttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgta |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5903861 |
ttcctcctttttgtacgaagctcctctcggttacatcattgaagacgttcgacccaacggtggcgtagaaaaattcaaatctgctgattactcaaacgta |
5903762 |
T |
|
| Q |
101 |
agtt---gtttccatttcaatttcaattcctttgattaatgtcaacattatagtttaaaatggttaaatttggctttg-ttttttaacacccctttt-ct |
195 |
Q |
| |
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| || ||| ||||| |||| |||||||||||||||| | ||||| ||||| ||| || | ||||||||||| ||||||||||||| |||| || |
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| T |
5903761 |
atttctcattttaatttctattttaattcctttgattaattttaacatcatagtataagattggatgatttggctttgtttttttaacaccctttttgct |
5903662 |
T |
|
| Q |
196 |
tta---ttgtgcagtgcacccgcaaaccatcctgagannnnnnngggttgtgatatagttcttaggtttttcattccgcaaaattattc |
281 |
Q |
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||| || |||||||||||||||||||||||||||| ||||| |||||||||| |||||||| | |||| |||||||||||| |
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| T |
5903661 |
ttatttttatgcagtgcacccgcaaaccatcctgaga-ttttctgggttctgatatagtttttaggtttataattctgcaaaattattc |
5903574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 355 - 448
Target Start/End: Complemental strand, 5903501 - 5903408
Alignment:
| Q |
355 |
caaacaacaaaaattattttctcctttgagtcaagatgaccatgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataac |
448 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5903501 |
caaacaacaaaaattgttttctcctttgagtcaagatgaccatgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataac |
5903408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 359 - 448
Target Start/End: Original strand, 5911706 - 5911795
Alignment:
| Q |
359 |
caacaaaaattattttctcctttgagtcaagatgaccatgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataac |
448 |
Q |
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| T |
5911706 |
caacaaaaattattttcccctttgagtcaagatgaccgtgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataac |
5911795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 355 - 448
Target Start/End: Original strand, 5918336 - 5918429
Alignment:
| Q |
355 |
caaacaacaaaaattattttctcctttgagtcaagatgaccatgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataac |
448 |
Q |
| |
|
||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5918336 |
caaactacagaaattattttcccctttgagtcaagatgaccatgacaaactcagctatcggttttgaaggttatgaaaagaggcttgagataac |
5918429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 363965 - 363675
Alignment:
| Q |
1 |
ttcctcctttttgtacgaagctcctctcggttacatcattgaagatgttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgta |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
363965 |
ttcctcctttttgtacgaagctcctctcggttacatcattgaagacgttcgacctaatggtggagtagaaaaattcaaatcacctgattactcaaacgta |
363866 |
T |
|
| Q |
101 |
--agtt----------gtttccatttcaatttcaattcctttgattaatgtcaacattatagtttaaaatggttaaatttggctttgttttttaacaccc |
188 |
Q |
| |
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| || |||| |||||||||||||||||||||||||||||| |||||||| | | ||||| |||||||||||||||||||||||| |
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| T |
363865 |
ataatttcccatttcaatttcaatttcaatttcaattcctttgattaatgtctacattata----agattggtt-gatttggctttgttttttaacaccc |
363771 |
T |
|
| Q |
189 |
-cttttctttattgtgcagtgcacccgcaaaccatcctgagannnnnnngggttgtgatatagttcttaggtttttcattccgcaaaattattctag |
284 |
Q |
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||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||| ||||||||||||||| |
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| T |
363770 |
ttttttctttattatgcagtgcacccgcaaaccatcctgaca-ttttctgggttctgatatagtttgtaggtttttcattctgcaaaattattctag |
363675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 355 - 448
Target Start/End: Complemental strand, 363634 - 363541
Alignment:
| Q |
355 |
caaacaacaaaaattattttctcctttgagtcaagatgaccatgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataac |
448 |
Q |
| |
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||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
363634 |
caaactacaaaaattattttcccctttgattcaagatggccatgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataac |
363541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 3774 - 3863
Alignment:
| Q |
14 |
tacgaagctcctctcggttacatcattgaagatgttcgacctaacggtggagtagaaaaattcaaatctgctgattactcaaacgtaagt |
103 |
Q |
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||||||||||| ||||| |||| ||||||||| |||| |||||||||||| | | || |||| ||| |||| |||||| ||||||||| |
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| T |
3774 |
tacgaagctcccctcggatacagcattgaagacattcgtcctaacggtggaatcaagaagttcagatcagctgcttactccaacgtaagt |
3863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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