View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_low_6 (Length: 411)
Name: NF3675_low_6
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 14 - 396
Target Start/End: Original strand, 31059826 - 31060208
Alignment:
| Q |
14 |
agaccaaatgagagaaggaaaaacatcacatgacaatcggtgtcagacaatacgacatgtgattttattcaattatttttcttcttctgaatttattacc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
31059826 |
agaccaaatgagagaaggaaaaacatcacatgacaatcggtgtcagacaatacgacatgtgattttattcaatttttttttttcttctgaatttattacc |
31059925 |
T |
|
| Q |
114 |
attgtcgacgtgtcagtttaaaatgcccgtctttgtgaaaatgctttattgcagaggtgtagcagcctaagcacgtttataacgaacatgagaatacaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31059926 |
attgtcgacgtgtcagtttaaaatgcccgtctttgtgaaaatgctttattgcagaggtgtagcagcctaagcacgtttataacgaacatgagaatacaaa |
31060025 |
T |
|
| Q |
214 |
tcatgcatccaaataatttcagccgtcaattatggagagaaaaagtagtctagaaacaaacgaggagtcttatgagcctgataagattacagaggacgca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31060026 |
tcatgcatccaaataatttcagccgtcaattatggagagaaaaagtagtctagaaacaaacgaggagtcttatgagcctgataagattacagaggacgca |
31060125 |
T |
|
| Q |
314 |
caaaaattcttacagtaatttttgacaaaacattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacat |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31060126 |
caaaaattcttacagtaatttttgacaaaacattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacat |
31060208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 31174624 - 31174572
Alignment:
| Q |
344 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacat |
396 |
Q |
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| T |
31174624 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacat |
31174572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 3399924 - 3399976
Alignment:
| Q |
344 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3399924 |
cattaagtatctctgtaacatcagctctgttctttccaatcaagaaacaacat |
3399976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 31176032 - 31175995
Alignment:
| Q |
14 |
agaccaaatgagagaaggaaaaacatcacatgacaatc |
51 |
Q |
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|||||||||||||||||||||||| |||||||| |||| |
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| T |
31176032 |
agaccaaatgagagaaggaaaaacgtcacatgataatc |
31175995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 20810880 - 20810828
Alignment:
| Q |
344 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacat |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20810880 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacat |
20810828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 20837235 - 20837183
Alignment:
| Q |
344 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacat |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20837235 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacat |
20837183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 20811214 - 20811175
Alignment:
| Q |
198 |
aacatgagaatacaaatcatgcatccaaataatttcagcc |
237 |
Q |
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| T |
20811214 |
aacatgagaatgaaaatcatgcatccaaataatttcagcc |
20811175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 20837569 - 20837530
Alignment:
| Q |
198 |
aacatgagaatacaaatcatgcatccaaataatttcagcc |
237 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| |
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| T |
20837569 |
aacatgagaatgaaaatcatgcatccaaataatttcagcc |
20837530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 20812462 - 20812425
Alignment:
| Q |
14 |
agaccaaatgagagaaggaaaaacatcacatgacaatc |
51 |
Q |
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||||||||||||||||||||||||||||| ||| |||| |
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| T |
20812462 |
agaccaaatgagagaaggaaaaacatcacgtgataatc |
20812425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 8373034 - 8373086
Alignment:
| Q |
344 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacat |
396 |
Q |
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||||||| |||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
8373034 |
cattaaggatctctgtgacatcaactctgttctttccaatgaagaaacaacat |
8373086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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