View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_low_7 (Length: 395)
Name: NF3675_low_7
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_low_7 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 5910952 - 5911332
Alignment:
| Q |
15 |
aaataccacctagatttggttgcataactgtgtgttaactttcaattgcatttgtaacaactgtttaagaaattggtatgtcta-tcatccaatcttgat |
113 |
Q |
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| T |
5910952 |
aaataccacctagatttggttgcataactgtgtgttaactttcaattgcatttgtaacaactgtt-aagaaattggtatgtctaatcatccaatcttgat |
5911050 |
T |
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| Q |
114 |
ggatttgtgtttcatgctatattatttcagaaaaatgagaatactatgaacatggatgatagtaatagatacagtatgtaacttgttgaagtttttatga |
213 |
Q |
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| T |
5911051 |
gtatgtgtgtttcatgctatattatttcagaaaaatgagaatactacgaacatggatgatagtaatagatacagtatgtaacttgttgaagtttttatga |
5911150 |
T |
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| Q |
214 |
ttcccaattccaatttttcctcagcgttttcatgtagtatctacgactaaaattaacccaaaaatcatgatttctttgcaactactggcttaattttgtg |
313 |
Q |
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| T |
5911151 |
ttcccaattccaatttttcctcagcgttttcatgtagtatctacgactaaaattaacccaaaaatcatgatttctttgcaactactggcttaattttgtg |
5911250 |
T |
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| Q |
314 |
attgacattctgctttattcttttgtcagaaaggtgtgtgaatgaagaaatggagtcaaacggtggtaagaagaagtctagc |
395 |
Q |
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| T |
5911251 |
attgacattctgctttattcttttggcagaaaggtgtgtgaatgaagtaatggagtcaaaaggtggtaagaagaagtctagc |
5911332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 251 - 395
Target Start/End: Original strand, 5917851 - 5917995
Alignment:
| Q |
251 |
tatctacgactaaaattaacccaaaaatcatgatttctttgcaactactggcttaattttgtgattgacattctgctttattcttttgtcagaaaggtgt |
350 |
Q |
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| T |
5917851 |
tatctacgacaaatagtaatccagaaatcatgatttctttgcaattactggcttatttttgtgtttgacattttgcttctttctcttggcagaaaggtgt |
5917950 |
T |
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| Q |
351 |
gtgaatgaagaaatggagtcaaacggtggtaagaagaagtctagc |
395 |
Q |
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| T |
5917951 |
gtgaatgaactaatggagtctaaaggtggtaaaaagaagtctagc |
5917995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 324 - 395
Target Start/End: Complemental strand, 5903941 - 5903870
Alignment:
| Q |
324 |
tgctttattcttttgtcagaaaggtgtgtgaatgaagaaatggagtcaaacggtggtaagaagaagtctagc |
395 |
Q |
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| T |
5903941 |
tgctttattctttttgcagaaagttgtgtgaatgaactaatggagtcaaaaggtggtaagaagaagtctagc |
5903870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 364256 - 364159
Alignment:
| Q |
15 |
aaataccacctagatttggttgcataactgtgtgttaactttcaattgcatttgtaacaactgtttaagaaattggtatgtctatcatccaatcttgatg |
114 |
Q |
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| T |
364256 |
aaataccatcttgatttggttgcatagctgtgt--taactttcaattgcatttgtaacaacttgttaagaaattgatattgttaccatccaattttgatg |
364159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 395
Target Start/End: Complemental strand, 364079 - 363974
Alignment:
| Q |
288 |
tttgcaactactggcttaattttgtgattgacattctgctttattcttttgtcagaaaggtgtgtgaatgaagaaatggagtcaaacggtggtaagaaga |
387 |
Q |
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| T |
364079 |
tttgcaattaccggcttatttttgtgttttacattttgatttattctttttccagtaa--agtgtgaatgaactaatggagtctaaaggtggtaagaaga |
363982 |
T |
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| Q |
388 |
agtctagc |
395 |
Q |
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| T |
363981 |
agtctagc |
363974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 39903256 - 39903304
Alignment:
| Q |
141 |
cagaaaaatgagaatactatgaacatggatgatagtaatagatacagta |
189 |
Q |
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| T |
39903256 |
cagaaaaatgaaaatactacgaacatggatgatagtaatagatacagta |
39903304 |
T |
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