View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_low_8 (Length: 385)
Name: NF3675_low_8
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 184 - 367
Target Start/End: Original strand, 46255215 - 46255398
Alignment:
| Q |
184 |
tgtccaactatactctttacaagtgatgattcaagcgaaattctctaccagcaagatatgtatctaaatcttcggatgctacatcaaaaacaacaccatt |
283 |
Q |
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| T |
46255215 |
tgtccaactatactctttacaagtgatgattcaagcgaaattctctaccagcaagatatgtatctaaatcttcggctgctacatcaaaaacaacaccatt |
46255314 |
T |
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| Q |
284 |
tccatctgcagtgatagtaagacctttcaaagcctcaaccttctcttcaggcaaaaacctcctcaagattttatatgcaaaact |
367 |
Q |
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| T |
46255315 |
tccatctgcagtgatagtaagacctttcacagcctcaaccttctattcaggcaaaaacctcctcaagattttatatgcaaaact |
46255398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 184 - 367
Target Start/End: Original strand, 46245526 - 46245709
Alignment:
| Q |
184 |
tgtccaactatactctttacaagtgatgattcaagcgaaattctctaccagcaagatatgtatctaaatcttcggatgctacatcaaaaacaacaccatt |
283 |
Q |
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| T |
46245526 |
tgtctaactatactctttaaaagtgatgattcaagcgaaattctctaccagcaagatatgtatctaaatcttcagctgctacatcaaaaacaacaccatt |
46245625 |
T |
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| Q |
284 |
tccatctgcagtgatagtaagacctttcaaagcctcaaccttctcttcaggcaaaaacctcctcaagattttatatgcaaaact |
367 |
Q |
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| T |
46245626 |
tccatctgcagtgatagtaagacctttcacagcctcaaccttctcttcaggcaaaaacctcctcaagattttatatgcaaaact |
46245709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 46255076 - 46255187
Alignment:
| Q |
40 |
aatctaacccctcttgattgatctctctgttgcagacgcgacaattctttcaacacctttaatcttacatctgaggcattttccttacctgaagaacaaa |
139 |
Q |
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| T |
46255076 |
aatctaacccctcttgattgatctctctgttgcagacgcggcaattctttcaacacctttaatcttacatatgaagcatcttccttacctgaagaacaaa |
46255175 |
T |
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| Q |
140 |
tatgatagagtt |
151 |
Q |
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| T |
46255176 |
tatgatagagtt |
46255187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 46245388 - 46245492
Alignment:
| Q |
40 |
aatctaacccctcttgattgatctctctgttgcagacgcgacaattctttcaacacctttaatcttacatctgaggcattttccttacctgaagaacaaa |
139 |
Q |
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| T |
46245388 |
aatctaccacctcttgattgatctctctgttgcagacgtggcaattctttcaacacctctaatcttacatctgagacattttccttacctaaagaacaaa |
46245487 |
T |
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| Q |
140 |
tatga |
144 |
Q |
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||||| |
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| T |
46245488 |
tatga |
46245492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 12370262 - 12370350
Alignment:
| Q |
40 |
aatctaacccctcttgattgatctctctgttgcagacgcgacaattctttcaacacctttaatcttacatctgaggcattttccttacc |
128 |
Q |
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|||||| ||||||| ||||||||||| |||||| ||||||||||||||| |||| || |||||||||||| ||||||||||||||||| |
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| T |
12370262 |
aatctaccccctctcaattgatctctcggttgcaaacgcgacaattcttttaacatctctaatcttacatcagaggcattttccttacc |
12370350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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