View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3675_low_9 (Length: 373)
Name: NF3675_low_9
Description: NF3675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3675_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 112 - 358
Target Start/End: Original strand, 47081463 - 47081705
Alignment:
| Q |
112 |
cttaaatttaaactcaaccaaccatataattatctagctatgggagtacactattgttttgcctttgcaacattttaatctcaagaaaggttgaattatt |
211 |
Q |
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| T |
47081463 |
cttaaatttaaactcaaccaaccatataattatctagctatgggagtacactattgttttgactttgcaacattttaatctcaagaaaggg-gaatt--- |
47081558 |
T |
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| Q |
212 |
gtttgttgataaaatcaatcgtgtgtggtgatgtgcagggtgttcgtccattcgttgagctatcaacatgcacaacaatagtatcatccctagatttcga |
311 |
Q |
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| T |
47081559 |
gttcgttgataaaatcaatcgtgtgtggtgatgtgcagggtgttcgtccattcgttgagctatcaacatgcacaacaatagtatcatccctagatttcga |
47081658 |
T |
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| Q |
312 |
accatcaatggactacaacgacttctcaacttacccaagagcctcat |
358 |
Q |
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| T |
47081659 |
accatcaatggactacaacgacttctcaacttacccaagagcctcat |
47081705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 47081374 - 47081460
Alignment:
| Q |
1 |
tgtactcatgcaacaaaaacaccaattctcaacaattttctttaggatttttgtttaataaaatgattgacttgttgtgtaagatta |
87 |
Q |
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| T |
47081374 |
tgtactcatgcaacaaaagcaccaattctcaacaattttctttaggatttttgtttaataaaatgattgacttgttgtgtaagatta |
47081460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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