View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_high_1 (Length: 596)
Name: NF3676_high_1
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 41996007 - 41995733
Alignment:
| Q |
12 |
aattcttcaagttattgagaaagatttcacaacttcgaaaggaaatgagttttaaaattagaaaaatatcaattcatatcgactcttcgagtcatgatgt |
111 |
Q |
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| T |
41996007 |
aattcttcaagttattgagaaagatttcacaacttcaaaaggaaatgagttttaaaattagaaaaatatcaatccatattgactcttcgagtcatgatgt |
41995908 |
T |
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| Q |
112 |
atgagtatcacaattcttcctccaacattataattttttaggaattaatttgaatttaaagttaaattagacgaggctgaaacaatctcatcgaatcgat |
211 |
Q |
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| T |
41995907 |
atgagtatcaaaattcttcctccaacattataattttttaggaattaatttgaatttaaagttaaattagacgaggctgaaacaatctcatcgaatcgat |
41995808 |
T |
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| Q |
212 |
caagttctcttgatagtcaataccttaacttctattgaatatttttgcatttggtttaaagtaatatgggtgttt |
286 |
Q |
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| T |
41995807 |
caagttctcttgatagtcaataccttaacttctatcgaatatttttgcatttggtttaaagtaatatgggtgttt |
41995733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 327 - 555
Target Start/End: Complemental strand, 41995691 - 41995463
Alignment:
| Q |
327 |
ttgaatcaaaccgaaccgttcataaaatttcaagttcaacctagaactttttcctcgtcnnnnnnnncttagaattctatctgtttatatacgctcttca |
426 |
Q |
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| T |
41995691 |
ttgaatcaaaccgaaccgttcataaaatttcaagttcaacctaaaactttttcctcgtcgaaagaaacttagaattctatctgtttatatactgtcttca |
41995592 |
T |
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| Q |
427 |
nnnnnnnacatgtcgtgtcttttc-tttttaaagaacatgttatgtcttattaccgtttagaatgggatatcaaacnnnnnnnnnnnacatagaaaataa |
525 |
Q |
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| T |
41995591 |
-ttttttacatgccgtgtcttttcttttttaaagaacatgtcatgtcttattaccgtttagaatgggatatcaaactatttttttttacatagaaaagaa |
41995493 |
T |
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| Q |
526 |
attataatcaactaatcattctacaagttt |
555 |
Q |
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| T |
41995492 |
attataatcaactaatcgttgtacaagttt |
41995463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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