View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3676_high_13 (Length: 289)

Name: NF3676_high_13
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3676_high_13
NF3676_high_13
[»] chr4 (22 HSPs)
chr4 (130-266)||(23408685-23408821)
chr4 (134-266)||(23868733-23868865)
chr4 (130-266)||(23402071-23402207)
chr4 (130-266)||(23453517-23453653)
chr4 (134-266)||(24307224-24307356)
chr4 (134-266)||(23415854-23415986)
chr4 (134-266)||(23885828-23885960)
chr4 (134-266)||(26832736-26832868)
chr4 (134-266)||(26434025-26434157)
chr4 (134-266)||(26435805-26435937)
chr4 (134-266)||(34662186-34662318)
chr4 (5-90)||(23401946-23402031)
chr4 (2-99)||(26832604-26832701)
chr4 (1-96)||(24307091-24307186)
chr4 (5-99)||(23416018-23416112)
chr4 (5-90)||(23408861-23408946)
chr4 (2-99)||(26433893-26433990)
chr4 (2-99)||(26435673-26435770)
chr4 (1-99)||(23868600-23868698)
chr4 (5-99)||(23885699-23885793)
chr4 (2-93)||(34662359-34662450)
chr4 (5-87)||(23453696-23453778)
[»] chr1 (4 HSPs)
chr1 (134-266)||(41670401-41670533)
chr1 (131-266)||(40795767-40795902)
chr1 (134-255)||(29391467-29391588)
chr1 (226-262)||(33216558-33216594)
[»] chr7 (2 HSPs)
chr7 (134-261)||(40180420-40180547)
chr7 (226-262)||(47317395-47317431)
[»] chr8 (1 HSPs)
chr8 (134-259)||(29684701-29684826)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 23408821 - 23408685
Alignment:
Q  130 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 229  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  23408821 tgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatc 23408722  T
Q  230 aatgatatcttcgagaagcttgctcaagaatcatcca 266  Q
    |||||||||||||||||||||||||||||||||||||    
T  23408721 aatgatatcttcgagaagcttgctcaagaatcatcca 23408685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 23868733 - 23868865
Alignment:
Q  134 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 233  Q
    |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23868733 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 23868832  T
Q  234 atatcttcgagaagcttgctcaagaatcatcca 266  Q
    ||||||||||||| |||||||||||||||||||    
T  23868833 atatcttcgagaaacttgctcaagaatcatcca 23868865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 130 - 266
Target Start/End: Original strand, 23402071 - 23402207
Alignment:
Q  130 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 229  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  23402071 tgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc 23402170  T
Q  230 aatgatatcttcgagaagcttgctcaagaatcatcca 266  Q
    |||||||||||||||||||||||||||||||||||||    
T  23402171 aatgatatcttcgagaagcttgctcaagaatcatcca 23402207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 130 - 266
Target Start/End: Complemental strand, 23453653 - 23453517
Alignment:
Q  130 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 229  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  23453653 tgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc 23453554  T
Q  230 aatgatatcttcgagaagcttgctcaagaatcatcca 266  Q
    |||||||||||||||||||||||||||||||||||||    
T  23453553 aatgatatcttcgagaagcttgctcaagaatcatcca 23453517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 24307224 - 24307356
Alignment:
Q  134 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 233  Q
    ||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24307224 gaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 24307323  T
Q  234 atatcttcgagaagcttgctcaagaatcatcca 266  Q
    ||||||||||||| || ||||||||||||||||    
T  24307324 atatcttcgagaaactagctcaagaatcatcca 24307356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 134 - 266
Target Start/End: Complemental strand, 23415986 - 23415854
Alignment:
Q  134 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 233  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  23415986 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23415887  T
Q  234 atatcttcgagaagcttgctcaagaatcatcca 266  Q
    |||||||||||||||||||||||||||||||||    
T  23415886 atatcttcgagaagcttgctcaagaatcatcca 23415854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 23885828 - 23885960
Alignment:
Q  134 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 233  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  23885828 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23885927  T
Q  234 atatcttcgagaagcttgctcaagaatcatcca 266  Q
    |||||||||||||||||||||||||||||||||    
T  23885928 atatcttcgagaagcttgctcaagaatcatcca 23885960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 26832736 - 26832868
Alignment:
Q  134 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 233  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26832736 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26832835  T
Q  234 atatcttcgagaagcttgctcaagaatcatcca 266  Q
    ||||||||||||| || ||||||||||||||||    
T  26832836 atatcttcgagaaactcgctcaagaatcatcca 26832868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 26434025 - 26434157
Alignment:
Q  134 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 233  Q
    |||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26434025 gaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26434124  T
Q  234 atatcttcgagaagcttgctcaagaatcatcca 266  Q
    ||||||||||||| || ||||||||||||||||    
T  26434125 atatcttcgagaaactcgctcaagaatcatcca 26434157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 26435805 - 26435937
Alignment:
Q  134 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 233  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26435805 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26435904  T
Q  234 atatcttcgagaagcttgctcaagaatcatcca 266  Q
    ||||||||||||| ||  |||||||||| ||||    
T  26435905 atatcttcgagaaactcactcaagaatcttcca 26435937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 134 - 266
Target Start/End: Complemental strand, 34662318 - 34662186
Alignment:
Q  134 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 233  Q
    ||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  34662318 gaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcatcaatg 34662219  T
Q  234 atatcttcgagaagcttgctcaagaatcatcca 266  Q
    |||||||||||||||| ||||||||||| ||||    
T  34662218 atatcttcgagaagctcgctcaagaatcttcca 34662186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 23401946 - 23402031
Alignment:
Q  5 gaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc 90  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23401946 gaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc 23402031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 26832604 - 26832701
Alignment:
Q  2 gcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgccgg 99  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||    
T  26832604 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccaaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 26832701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 24307091 - 24307186
Alignment:
Q  1 cgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgc 96  Q
    ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24307091 cgcagaggagaagaagtccaccgtcgccgagaaggctcctgctgagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttccgctgc 24307186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 23416112 - 23416018
Alignment:
Q  5 gaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgccgg 99  Q
    |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23416112 gaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggcagggaagaagctaccaaaggaaggtggttcagctgccgg 23416018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 23408946 - 23408861
Alignment:
Q  5 gaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc 90  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23408946 gaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagcccaaggcaggaaagaagctaccaaaggaaggtggttc 23408861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 26433893 - 26433990
Alignment:
Q  2 gcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgccgg 99  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||    
T  26433893 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 26433990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 26435673 - 26435770
Alignment:
Q  2 gcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgccgg 99  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||    
T  26435673 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 26435770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23868600 - 23868698
Alignment:
Q  1 cgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgccgg 99  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||    
T  23868600 cgcagaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggttcagccgccgg 23868698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 23885699 - 23885793
Alignment:
Q  5 gaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagctgccgg 99  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||    
T  23885699 gaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggttcagccgccgg 23885793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 34662450 - 34662359
Alignment:
Q  2 gcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttcagc 93  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||||||||    
T  34662450 gcagaggagaagaaatccaccgtcgccgagaaagctccggcagagaagaagccaaaggccggaaagaagcttccaaaggaaagcggttcagc 34662359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 23453778 - 23453696
Alignment:
Q  5 gaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtgg 87  Q
    |||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| || |||||||||||    
T  23453778 gaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggctggaaagaagcttcctaaggaaggtgg 23453696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 41670401 - 41670533
Alignment:
Q  134 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 233  Q
    ||||| |||||||||||||| ||||| || || || || ||||| || |||||||||||||||||||| || ||||| || |||||||| ||||||||||    
T  41670401 gaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg 41670500  T
Q  234 atatcttcgagaagcttgctcaagaatcatcca 266  Q
    ||||||| |||||||| ||||| ||||| ||||    
T  41670501 atatctttgagaagctcgctcaggaatcttcca 41670533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 266
Target Start/End: Original strand, 40795767 - 40795902
Alignment:
Q  131 gtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca 230  Q
    |||||||| |||||||||||||| ||||| || || || || ||||| || |||||||| ||||| ||||| || ||||| || ||||||||||||||||    
T  40795767 gtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcatca 40795866  T
Q  231 atgatatcttcgagaagcttgctcaagaatcatcca 266  Q
    |||| ||||| |||||||| ||||| ||||||||||    
T  40795867 atgacatctttgagaagctcgctcaggaatcatcca 40795902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 255
Target Start/End: Original strand, 29391467 - 29391588
Alignment:
Q  134 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 233  Q
    ||||| || ||||| ||||| ||||| || || ||||| ||||| || || || ||||| ||   |||||| ||||| || |||||||||||||||||||    
T  29391467 gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg 29391566  T
Q  234 atatcttcgagaagcttgctca 255  Q
    ||||||| ||||| || |||||    
T  29391567 atatctttgagaaactcgctca 29391588  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
Q  226 catcaatgatatcttcgagaagcttgctcaagaatca 262  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33216558 catcaatgatatcttcgtgaagcttgctcaagaatca 33216594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 40180547 - 40180420
Alignment:
Q  134 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 233  Q
    ||||| |||||||| ||||| ||||| || |||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || |    
T  40180547 gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg 40180448  T
Q  234 atatcttcgagaagcttgctcaagaatc 261  Q
    ||||||| ||||| || ||||| |||||    
T  40180447 atatctttgagaaactcgctcaggaatc 40180420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
Q  226 catcaatgatatcttcgagaagcttgctcaagaatca 262  Q
    ||||||||||||||||| |||||||||||||||||||    
T  47317395 catcaatgatatcttcgtgaagcttgctcaagaatca 47317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 29684701 - 29684826
Alignment:
Q  134 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 233  Q
    ||||| |||||||| || |||||||| || || ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || |    
T  29684701 gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg 29684800  T
Q  234 atatcttcgagaagcttgctcaagaa 259  Q
    |||||||  |||| || |||||||||    
T  29684801 atatctttaagaaactcgctcaagaa 29684826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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