View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3676_high_18 (Length: 278)
Name: NF3676_high_18
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 41046417 - 41046644
Alignment:
| Q |
18 |
ccgtaataaaaaattgggacaactcaagaaaagaataattatgtctgtaacaataatcaaaaagagataatttcatttacaatnnnnnnnntgttaatta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41046417 |
ccgtaataaaaaattgggacaactcaagaaaagaataattatgtctgtaacaataatcaaaaagagataatttcatttacaataaaaaaaatgttaatta |
41046516 |
T |
|
| Q |
118 |
acaaattacaaattattcatgaataaatcatccatttttattatttttcttttgtattcaatcaaataattgcaaagcaagattattcatataaatatca |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41046517 |
aaaaattacaaattattcatgaataaatcatccatttttattatttttcttttgtattcaatcaaataattgcaaagcaagattattcatataaatatca |
41046616 |
T |
|
| Q |
218 |
attatacatgtcatacgagaattattta |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41046617 |
attatacatgtcatacgagaattattta |
41046644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University