View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_high_2 (Length: 541)
Name: NF3676_high_2
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 36468384 - 36468679
Alignment:
| Q |
1 |
caccaccgctatcatcacgctcctcttcttctcctcttagaattccacccctccatttccaagttctaacattctaactcccctaatatacacacgaaaa |
100 |
Q |
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| T |
36468384 |
caccaccgctatcattacgctcctcttcttctcctcttagaattccacccctccatttccatgttctaacattctaactcccctaatatacacacgaaaa |
36468483 |
T |
|
| Q |
101 |
accaaaaacccttatttatcttcaatggttttaatataaacaacttgtgcaactctttcacgatataaatgaattagaaatattttgtttgtaacctgat |
200 |
Q |
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| T |
36468484 |
accaaaaacccttatttatcttcaatggtattaatataaacaacttctgcaactctttcacgatataaatgaattagaaatattttgtttgtaacctgat |
36468583 |
T |
|
| Q |
201 |
tttaactctaactcatttaacttattttcataaacttgttttgctttcgttcaatcttcaattgttaaaaacaacttgtgcacaaattaaattctt |
296 |
Q |
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| T |
36468584 |
tttaactctaactcatttaacttattttcataaacttgttttgctttcgttcaatcttcaattgttaaaaacaacttgtgcacaaattaaattctt |
36468679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 380 - 528
Target Start/End: Original strand, 36470228 - 36470376
Alignment:
| Q |
380 |
tcttaatcttttcttctctatcctcaatcctgtccactattacactccacccttgcattttccctccccttatctgatttctaataacaaatagttctta |
479 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
36470228 |
tcttaatcttttattctcaatcctcaatcctgtccactattacactccacccttgcattttccctccccttatctgatttctaataataaatagtgctta |
36470327 |
T |
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| Q |
480 |
tgtactcacagttgtgcattcacctttcatacatccattccatatagaa |
528 |
Q |
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| T |
36470328 |
tgtactcacagttgtgcattcacctttcatacatccattccatatagaa |
36470376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 36469936 - 36470006
Alignment:
| Q |
314 |
aaaggaaatatacctttctcgctcatccaactttttaaataagagcgtcatttacacattttagcatctta |
384 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36469936 |
aaaggaaatatatctttctcgctcagccaactttttaaataagagcgtcatttacacattttagcatctta |
36470006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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