View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3676_high_23 (Length: 251)

Name: NF3676_high_23
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3676_high_23
NF3676_high_23
[»] chr4 (13 HSPs)
chr4 (5-251)||(26435897-26436143)
chr4 (59-251)||(26434117-26434309)
chr4 (59-251)||(26832828-26833020)
chr4 (65-251)||(24307316-24307502)
chr4 (63-251)||(23415706-23415894)
chr4 (70-251)||(23408544-23408725)
chr4 (66-251)||(23885920-23886105)
chr4 (69-251)||(23453375-23453557)
chr4 (67-251)||(23402167-23402351)
chr4 (69-251)||(23868825-23869007)
chr4 (69-251)||(34662044-34662226)
chr4 (122-251)||(23451788-23451917)
chr4 (41-147)||(31632848-31632954)
[»] chr1 (5 HSPs)
chr1 (65-193)||(33216596-33216724)
chr1 (93-251)||(41670493-41670651)
chr1 (41-150)||(45576397-45576506)
chr1 (73-251)||(29391559-29391737)
chr1 (81-251)||(40795862-40796032)
[»] chr7 (2 HSPs)
chr7 (65-193)||(47317433-47317561)
chr7 (93-244)||(40180297-40180448)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 26436143 - 26435897
Alignment:
5 aaaataaaaagactaatggtgcataaacagacatagtaacaacctataggaaactagttttcaaatctaagaactagtaaacttagtgacagccttggta 104  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||    
26436143 aaaaaaaaaagactaatggtgcataaacagacatagtaacaacctataggaaactagatctcaaatctaagaactggtaaacttagtgacagccttggta 26436044  T
105 ccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttattgtacctag 204  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||    
26436043 ccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgag 26435944  T
205 cgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    | || || |||||||| ||||  ||||||||||||||||||||||||    
26435943 caagtctggaagattcttgagtgagtttctcgaagatatcattgatg 26435897  T

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Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 59 - 251
Target Start/End: Complemental strand, 26434309 - 26434117
Alignment:
59 tagttttcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26434309 tagttttcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcg 26434210  T
159 gtctgaatttcccttgaagtgattgttggcttcttattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    ||||||||||||||||||||||||||||||||||| ||||| | ||| || || || ||||| ||||| ||||||||||||||||||||||||    
26434209 gtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatg 26434117  T

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Target: chr4; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 59 - 251
Target Start/End: Complemental strand, 26833020 - 26832828
Alignment:
59 tagttttcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26833020 tagttttcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcg 26832921  T
159 gtctgaatttcccttgaagtgattgttggcttcttattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    ||||||||||||||||||||||||||||||||||| ||||| | ||| || || || ||||| ||||| ||||||||||||||||||||||||    
26832920 gtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatg 26832828  T

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Target: chr4; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 65 - 251
Target Start/End: Complemental strand, 24307502 - 24307316
Alignment:
65 tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctga 164  Q
    |||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||    
24307502 tcaaatctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctga 24307403  T
165 atttcccttgaagtgattgttggcttcttattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    ||||||||||||||||||||||||||||| ||||| | ||| || || || ||||| ||||||||||||||||||||||||||||||    
24307402 atttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatg 24307316  T

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Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 63 - 251
Target Start/End: Original strand, 23415706 - 23415894
Alignment:
63 tttcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtct 162  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| || ||||    
23415706 tttcaagtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtct 23415805  T
163 gaatttcccttgaagtgattgttggcttcttattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    ||||||||||||||||||||||||||||||| ||||| | ||| || || || ||||| ||||| || |||||||||||||||||||||    
23415806 gaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatg 23415894  T

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Target: chr4; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 70 - 251
Target Start/End: Original strand, 23408544 - 23408725
Alignment:
70 tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc 169  Q
    ||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||||| || || |||||||| ||||||||||||||||||||    
23408544 tctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttc 23408643  T
170 ccttgaagtgattgttggcttcttattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    |||||||||||||||||||||||| ||||| | ||| || || || ||||| ||||| || |||||||||||||||||||||    
23408644 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatg 23408725  T

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Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 66 - 251
Target Start/End: Complemental strand, 23886105 - 23885920
Alignment:
66 caaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaa 165  Q
    ||||||||||||||||||||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || |||||||    
23886105 caaatctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaa 23886006  T
166 tttcccttgaagtgattgttggcttcttattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    |||||||||||||||||||||||||||| ||||| | ||| || || || ||||| ||||| || |||||||||||||||||||||    
23886005 tttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatg 23885920  T

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Target: chr4; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 23453375 - 23453557
Alignment:
69 atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt 168  Q
    |||||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||    
23453375 atctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaattt 23453474  T
169 cccttgaagtgattgttggcttcttattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    ||||||||||||||||||||||||| ||||| | ||| || || || ||||| ||||| || |||||||||||||||||||||    
23453475 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatg 23453557  T

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Target: chr4; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 67 - 251
Target Start/End: Complemental strand, 23402351 - 23402167
Alignment:
67 aaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaat 166  Q
    |||||||||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||||||||||| || |||||||||||||| || ||||||||    
23402351 aaatctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaat 23402252  T
167 ttcccttgaagtgattgttggcttcttattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    ||||||||||||||||||||||||||| ||||| | ||| || || || ||||| ||||| || |||||||||||||||||||||    
23402251 ttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatg 23402167  T

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Target: chr4; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 23869007 - 23868825
Alignment:
69 atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt 168  Q
    |||||||||||||| |||||||| ||||| || || || |||||||||||||| |||||||||||||| || |||||||| ||||| || ||||||||||    
23869007 atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaattt 23868908  T
169 cccttgaagtgattgttggcttcttattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    ||||||||||||||||||||||||| ||||| | ||| || || || ||||| ||||| ||||||||||||||||||||||||    
23868907 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatg 23868825  T

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Target: chr4; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 34662044 - 34662226
Alignment:
69 atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt 168  Q
    ||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||| |||||||| || || ||||||||||| || || ||||||||||    
34662044 atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt 34662143  T
169 cccttgaagtgattgttggcttcttattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    |||| ||||| || || |||||||| || ||||| || || || |||||||| ||||| || |||||||||||||||||||||    
34662144 ccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatg 34662226  T

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Target: chr4; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 251
Target Start/End: Original strand, 23451788 - 23451917
Alignment:
122 cttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttattgtacctagcgagccttgaagattcc 221  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||| || || ||  ||||     
23451788 cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct 23451887  T
222 tgagctagtttctcgaagatatcattgatg 251  Q
    ||||| || ||||| |||||||| ||||||    
23451888 tgagcgagcttctcaaagatatcgttgatg 23451917  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 31632954 - 31632848
Alignment:
41 taacaacctataggaaactagttttcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggc 140  Q
    ||||||||||||| |||| || |  ||||||||||| || || || || || ||| | |||||||||||| ||||| ||||||| ||||||||| |||||    
31632954 taacaacctatagtaaacaagatcccaaatctaagagcttgtgaatttggtcacaactttggtaccctcacaaacaacatgcttagccaattcatcgggc 31632855  T
141 agaacaa 147  Q
    | |||||    
31632854 acaacaa 31632848  T

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Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 33216724 - 33216596
Alignment:
65 tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctga 164  Q
    |||||| ||||||| ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||  | |||||||| ||||| || || |||    
33216724 tcaaatttaagaaccagtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttga 33216625  T
165 atttcccttgaagtgattgttggcttctt 193  Q
    |||| ||||||||||||||||||||||||    
33216624 attttccttgaagtgattgttggcttctt 33216596  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 251
Target Start/End: Complemental strand, 41670651 - 41670493
Alignment:
93 acagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct 192  Q
    ||||||||||| |||||||| ||||||||||| || | ||||||||| |||||||| |  || || ||||| || ||||  ||||||||||| |||||||    
41670651 acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct 41670552  T
193 tattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    | |||||||| || || || |||||||||||||| || ||||| |||||||||||||||    
41670551 tgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatg 41670493  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 45576506 - 45576397
Alignment:
41 taacaacctataggaaactagttttcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggc 140  Q
    ||||||||||||| |||| || | |||||||||||| || || || || || ||||| |||||||||||||||||| ||||||| ||||||||| |||||    
45576506 taacaacctatagtaaacaagatctcaaatctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggc 45576407  T
141 agaacaagcc 150  Q
    ||||||||||    
45576406 agaacaagcc 45576397  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 29391737 - 29391559
Alignment:
73 aagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttccct 172  Q
    ||||||| ||||| || || ||||||||||| || || ||||||||||| || |||||||||||||| ||||| |  |  || || || ||||| |||||    
29391737 aagaactcgtaaatttggtaacagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccct 29391638  T
173 tgaagtgattgttggcttcttattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
     || || || || || ||||| ||||| | ||| |  || |||| ||||||||| |||||||| |||||||||||||||    
29391637 cgacgtaatcgtcggtttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatg 29391559  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 251
Target Start/End: Complemental strand, 40796032 - 40795862
Alignment:
81 gtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtga 180  Q
    ||||| |||||||| || ||||| ||||| || ||||| |||||||| | ||| ||||| ||||| || |  || || |||||||| || |  || ||||    
40796032 gtaaatttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacgagaggtga 40795933  T
181 ttgttggcttcttattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatcattgatg 251  Q
    | || || ||||| ||||| | |||||| || || ||||||||||| || ||||| ||||| |||||||||    
40795932 tggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatg 40795862  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 47317561 - 47317433
Alignment:
65 tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctga 164  Q
    |||||| ||||||||||||||||| || ||||| |||||||||||||||||| |||| |||||||||||||| || |||| ||| |||||  | || |||    
47317561 tcaaatttaagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttga 47317462  T
165 atttcccttgaagtgattgttggcttctt 193  Q
    |||||||||||||||||||||||||||||    
47317461 atttcccttgaagtgattgttggcttctt 47317433  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 40180297 - 40180448
Alignment:
93 acagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct 192  Q
    |||||||| || || |||||||||||||| || |||||||| || || ||||| |  || || || || ||||| ||||| ||||| || || |||||||    
40180297 acagccttagtcccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttct 40180396  T
193 tattgtacctagcgagccttgaagattcctgagctagtttctcgaagatatc 244  Q
    | || |||||||| |  |  || ||||||||||| |||||||| ||||||||    
40180397 tgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatc 40180448  T

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