View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3676_high_25 (Length: 250)
Name: NF3676_high_25
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_high_25 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 980807 - 981046
Alignment:
| Q |
1 |
atacaaacttacaaccatgttttctgcatatttagttgaataggttctgtctttccttaaccaagttgtcactataacctcagctcgacaaatgggtctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
980807 |
atacaaacttacaaccatgttttctgcatatttagttgaataggttccgtctttcttcaaccaagttgtcactataacctcagctcgacaaatgggtctt |
980906 |
T |
|
| Q |
101 |
ctcaaatctgtctcctatcacattatgttaaagcaaagaaaaagttatagtatggtaggtaacctgaaactaaatttgcaaaaatacaaccaaaatatga |
200 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
980907 |
ctcaattctgtctcctatcatattatgttaaagcaaagaaaaagttagagtatgataggtaacctgaaactaaatttgcaaaaatactaccaaaatatga |
981006 |
T |
|
| Q |
201 |
ttct-cacattagaacaaaccatttcgtacgccctcctttg |
240 |
Q |
| |
|
|| | |||||| |||| |||||||||||| ||||||||||| |
|
|
| T |
981007 |
ttttacacattggaac-aaccatttcgtatgccctcctttg |
981046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University