View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_high_28 (Length: 247)
Name: NF3676_high_28
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_high_28 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: scaffold0039 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 24265 - 24486
Alignment:
| Q |
13 |
gaatggtggtggtatgaattcatgactatattttgtggctacttaagcaatccaagatcaagtgttgcatcaatgggggtgttaatccaaattacttcat |
112 |
Q |
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| T |
24265 |
gaatggtggtggtatgaatttatgactatattttgtggctacttaagcaatccaagatcaagtgttgcatcaatgggggtgttaatccaaattacttcac |
24364 |
T |
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| Q |
113 |
tgatgtacatttttccttattcactaagcaatagtgtttcaacaagagttggtaacatgataggtgcacaaaagccatcaaaagcaaaactttcagcaat |
212 |
Q |
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| T |
24365 |
ttatgtacatttttccttactcactaagcaatagtgtttcaacaagagttggtaacatgataggtgcacaaaagccatcaaaagcaaaactttcagcaat |
24464 |
T |
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| Q |
213 |
ttcaggactttctttcagcttc |
234 |
Q |
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| T |
24465 |
ttcaggactttctttcagcttc |
24486 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 45845721 - 45845652
Alignment:
| Q |
144 |
tagtgtttcaacaagagttggtaacatgataggtgcacaaaagccatcaaaagcaaaactttcagcaatt |
213 |
Q |
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| T |
45845721 |
tagtgtttccactagagttggtaacaaacttggtgctcaaaagccatcaaaagcaaaactttcagcaatt |
45845652 |
T |
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