View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_high_29 (Length: 241)
Name: NF3676_high_29
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 40592860 - 40592633
Alignment:
| Q |
1 |
tttggacaagaatattgatacaaccttctttcttcttgcgtctggttaattttgtagctggatttgctttgcaatgaaattagaaaaatgttaaatataa |
100 |
Q |
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| T |
40592860 |
tttggacaagaatattgatacaaccttctttcttcttgcgtctggttaattttgtagctggatttgctttgcaatgaaattagaaaaatgttaaatataa |
40592761 |
T |
|
| Q |
101 |
agacatcaac---cgaggagtagtcatacagtttgtgactgtactatcgtgaaatagattaaatgagacaattttaacttatattttttgttcgtagata |
197 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40592760 |
agacatcaactgaggaggagtagtcatacagtttatgactgtactatcgtgaaatagattaaatgagacaattttaacttatattttttgttcggagata |
40592661 |
T |
|
| Q |
198 |
gacaaatcgacaataatcattagaaact |
225 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
40592660 |
gacaaatcgacaataatcattagaaact |
40592633 |
T |
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