View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_high_34 (Length: 205)
Name: NF3676_high_34
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 40116348 - 40116171
Alignment:
| Q |
11 |
atcatcacatctgtcgattagagcatcataactgctcttggcaatgtgaaaacatctcaacaagcttgggataccctcaagaaaatgtttgctagcaaga |
110 |
Q |
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| T |
40116348 |
atcatcacatctgtcgatcagagcatcataactgctcttggcaatgtgaaaacatctcaacaagcttgggataccctcaagaaaatgtttgctagcaaga |
40116249 |
T |
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| Q |
111 |
ctagatcacgcattatgcatcttaaggagcgcctgtcttgtacaacaaagggctccaaatcagtttctgaatacctac |
188 |
Q |
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| T |
40116248 |
ctagatcacgcattatgcatcttaaggagcgcctgtctcgtacaacaaagggctccaaatcagtttctgaatacctac |
40116171 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 9039370 - 9039282
Alignment:
| Q |
14 |
atcacatctgtcgattagagcatcataactgctcttggcaatgtgaaaacatctcaacaagcttgggataccctcaagaaaatgtttgc |
102 |
Q |
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| T |
9039370 |
atcacatctgtcgatcatagcatcatcacgacattaggcaatgtcaaatcctcccaacaagcttgggatactctcaagaagatgtttgc |
9039282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 3016353 - 3016417
Alignment:
| Q |
77 |
tgggataccctcaagaaaatgtttgctagcaagactagatcacgcattatgcatcttaaggagcg |
141 |
Q |
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| T |
3016353 |
tgggatatccttaacaaaatgtttgcaagcaaaacaagagctcgcattatgcatcttaaagagcg |
3016417 |
T |
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