View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_high_4 (Length: 408)
Name: NF3676_high_4
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_high_4 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 113 - 395
Target Start/End: Original strand, 43712555 - 43712837
Alignment:
| Q |
113 |
gttgctgttgtgattgttttatttgcagggaatgaagcacttgctaagatggcaagtgtgggattattaccaaacatgatattgtatttaatgggatcat |
212 |
Q |
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| T |
43712555 |
gttgctgttgtgattgttttatttgcagggaatgaagcacttgctaagatggcaagtgtgggactattacccaacatgatattgtatttgatgggatcat |
43712654 |
T |
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| Q |
213 |
acagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43712655 |
acagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttatct |
43712754 |
T |
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| Q |
313 |
gggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatgatttacnnnnnnnnaattccattgtgtttttc |
395 |
Q |
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| T |
43712755 |
tggtcgcttcttaggtgtcggaataggttcttctatcagtttcctggtatgatttacttttttttaattccattgtgtttttc |
43712837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 118 - 369
Target Start/End: Original strand, 43697637 - 43697888
Alignment:
| Q |
118 |
tgttgtgattgttttatttgcagggaatgaagcacttgctaagatggcaagtgtgggattattaccaaacatgatattgtatttaatgggatcatacaga |
217 |
Q |
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| T |
43697637 |
tgttgtgattattttgattgaagggaatgaggcacttgctaggatggcaagtttgggactattaccaaacatgatattgtatttgatgggatcatacaga |
43697736 |
T |
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| Q |
218 |
cttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtc |
317 |
Q |
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| T |
43697737 |
cttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtc |
43697836 |
T |
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| Q |
318 |
gattcctaggtgttggaataggttcttctatcagtttcctggtatgatttac |
369 |
Q |
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| T |
43697837 |
gattcctaggtgttggaataggttcttctatcagtttcctggtatgatttac |
43697888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 143 - 363
Target Start/End: Original strand, 43726181 - 43726401
Alignment:
| Q |
143 |
aatgaagcacttgctaagatggcaagtgtgggattattaccaaacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcaga |
242 |
Q |
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| T |
43726181 |
aatgaggcacttgcaaggatggcaagtttgggactattgcccaatatgatattgtatttcatgggaagttacaggcttcatcttgccaaagctactcaga |
43726280 |
T |
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| Q |
243 |
tacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttc |
342 |
Q |
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| T |
43726281 |
ttcttctcttatcctctgcagctagcaatttcacacctgtggttggtgcttttattgcagattcttatctcggtcggttcctcggtgttggattaggttc |
43726380 |
T |
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| Q |
343 |
ttctatcagtttcctggtatg |
363 |
Q |
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| T |
43726381 |
atttgtcagcttcctggtatg |
43726401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 143 - 361
Target Start/End: Original strand, 43685111 - 43685329
Alignment:
| Q |
143 |
aatgaagcacttgctaagatggcaagtgtgggattattaccaaacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcaga |
242 |
Q |
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||||| |||||||||| |||||||||| |||||| ||| ||||||||||||||||| ||||| || |||| ||||| |||| || | |||| |||| |
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| T |
43685111 |
aatgaggcacttgctaggatggcaagtactggattaggacctaacatgatattgtatttgatgggttcttacaatcttcatcttgccacagctacccaga |
43685210 |
T |
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| Q |
243 |
tacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttc |
342 |
Q |
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||||||| |||||||||||||| | |||||||||||| | ||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||| |
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| T |
43685211 |
tacttctcatatcctctgcagctggaaatttcacacctcttgttgctgcttttattgcagattcttatattggtcgattcctaggtgttggaataggttc |
43685310 |
T |
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| Q |
343 |
ttctatcagtttcctggta |
361 |
Q |
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| T |
43685311 |
tattatcagtttcctggta |
43685329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 43712458 - 43712498
Alignment:
| Q |
16 |
ttatcattggtatcttatctaatatctatgatttgcatgca |
56 |
Q |
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| T |
43712458 |
ttatcattggtatcttatctaatatctatgatttgcatgca |
43712498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 43685002 - 43685042
Alignment:
| Q |
16 |
ttatcattggtatcttatctaatatctatgatttgcatgca |
56 |
Q |
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| T |
43685002 |
ttatcattggtatcttatctaatatctataacttgcatgca |
43685042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 363
Target Start/End: Complemental strand, 26223 - 26045
Alignment:
| Q |
185 |
aacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtga |
284 |
Q |
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||||||||||||||||| |||||| | |||| ||||| |||||| | ||| |||||||| || |||| ||||||| ||||| |||| |||||| |
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| T |
26223 |
aacatgatattgtatttgatgggaccttacaaccttcatcttggccaagctaaccagatactcctcttatttgctgcagccagcaagttcatgcctgtgg |
26124 |
T |
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| Q |
285 |
ttggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatg |
363 |
Q |
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| T |
26123 |
ttggtgcttttattgcagattcttatttgggtcgattcttaagtgttggattaggttctgctgtcagtttcctggtatg |
26045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 185 - 363
Target Start/End: Original strand, 25272008 - 25272186
Alignment:
| Q |
185 |
aacatgatattgtatttaatgggatcatacagacttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtga |
284 |
Q |
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||||||||||||||||| |||||| | |||| ||||| |||||| | ||| |||||||| || ||||| ||||||| |||| |||| |||||| |
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| T |
25272008 |
aacatgatattgtatttgatgggaccttacaaccttcatcttggccaagctaaccagatactcctcttatctgctgcagccggcaagttcatgcctgtgg |
25272107 |
T |
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| Q |
285 |
ttggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcctggtatg |
363 |
Q |
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||||||||||| |||||||||||| | ||||| ||||| || |||||||| |||||||| || |||||||||||||||| |
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| T |
25272108 |
ttggtgcttttgttgcagattcttatttgggtagattcttaagtgttggattaggttctgctgtcagtttcctggtatg |
25272186 |
T |
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