View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3676_high_6 (Length: 363)
Name: NF3676_high_6
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 2215160 - 2215497
Alignment:
| Q |
17 |
aattcaagtaagaaaaataaggatgatatcaggtcaatggaaactaatgtattgtttgaatagttgacttgggtcaatttttgtagatacatatgcatta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215160 |
aattcaagtaagaaaaataaggatgatatcaggtcaatggaaactaatgcattgtttgaatagttgacttgggtcaatttttgtagatacatatgcatta |
2215259 |
T |
|
| Q |
117 |
gaagttatttttctaaacctcattacaagtatggctagcagaaattaatgtctcttttgctacttctataaacatattgtggtttccattcctaatttga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215260 |
gaagttatttttctaaacctcattacaagtatggctagcagaaattaatgtctcttttgctacttctataaacatattgtggtttccattcctaatttga |
2215359 |
T |
|
| Q |
217 |
cttttaatacttgctacagggtgaaagtcagagttttgatttacctgtaaagaaaagaagcgatatttgtacaataatgtatactagcggaactactggt |
316 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215360 |
cttttaatacttgccacagggtgaaagtcagagttttgatttacctgtaaagaaaagaagcgatatttgtacaataatgtatactagcggaactactggt |
2215459 |
T |
|
| Q |
317 |
gaccccaagggagtattgatatccaataggagtattat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215460 |
gaccccaagggagtattgatatccaataggagtattat |
2215497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 2202563 - 2202900
Alignment:
| Q |
17 |
aattcaagtaagaaaaataaggatgatatcaggtcaatggaaactaatgtattgtttgaatagttgacttgggtcaatttttgtagatacatatgcatta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2202563 |
aattcaagtaagaaaaataaggatgatatcaggtcaatggaaacttatgcattgattggttagttgacttgggtcaatttttatagatacatatgcatta |
2202662 |
T |
|
| Q |
117 |
gaagttatttttctaaacctcattacaagtatggctagcagaaattaatgtctcttttgctacttctataaacatattgtggtttccattcctaatttga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||| |
|
|
| T |
2202663 |
aaagttatttttctaaacctcattacaagtatggcttgcagaaattaatgtctcttttgctacttctgtagacatattgtggtttctattccttatttga |
2202762 |
T |
|
| Q |
217 |
cttttaatacttgctacagggtgaaagtcagagttttgatttacctgtaaagaaaagaagcgatatttgtacaataatgtatactagcggaactactggt |
316 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2202763 |
tttttaatacttgccacagggtaaaagtcatagttttgatttacctgtaaagaaaagaagcgatatctgtacaataatgtatactagcggaactactggt |
2202862 |
T |
|
| Q |
317 |
gaccccaagggagtattgatatccaataggagtattat |
354 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2202863 |
gaccccaagggggtattgatatccaatgagagtattat |
2202900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 342
Target Start/End: Complemental strand, 41931437 - 41931345
Alignment:
| Q |
250 |
ttttgatttacctgtaaagaaaagaagcgatatttgtacaataatgtatactagcggaactactggtgaccccaagggagtattgatatccaa |
342 |
Q |
| |
|
||||||| | |||||||| || | |||||| || |||||||||||||| || || ||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
41931437 |
ttttgatcttcctgtaaaaaagaaaagcgacatatgtacaataatgtacacaagtggaacaaccggtgatcccaagggagtattgatatccaa |
41931345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University