View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_low_12 (Length: 303)
Name: NF3676_low_12
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 2215527 - 2215822
Alignment:
| Q |
1 |
tggagaatgtcaatgataaagtaagtatttatcttttatatttcatttgtaactacatgaaattgaatgcactgagcacttcgtatgcacaatttctttt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215527 |
tggagaatgtcaatgataaagtaaatatttatcttttatatttcatttgtaactacatgaaattgaatgcactgagcacttcgtatgcacaatttctttt |
2215626 |
T |
|
| Q |
101 |
catttaatttatgcatattatatatctaatttcaaagctctggatgtagnnnnnnnnnnnnnnnnnnncaggtttaagatactaaacgctcaagtgtcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2215627 |
catttaatttatgcatattatatatctaatttcaaagctctggatgtagttttttttctttttcttttcaggtttaagatactaaacgctcaagtgtcct |
2215726 |
T |
|
| Q |
201 |
ttctttgacttacaaaatctcccctcttttttctttgtttacagttgaccgagaaggatgtgtacttatcataccttcctctcgcacatacctttg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215727 |
ttctttgacttacaaaatctcccctcttttttctttgtttacagttgaccgagaaggatgtgtacttatcataccttcctctcgcacatacctttg |
2215822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 2202930 - 2203197
Alignment:
| Q |
1 |
tggagaatgtcaatgataaagtaagtatttatcttttatatttcatttgtaactacatgaaattgaatgcactgagcacttcgtatgcacaatttctttt |
100 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||| || |||| | |||||||| |||| | ||||||||||||||||| |
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| T |
2202930 |
tggagagtgtcaatgaaaaagtaagtatttatcttttatatttcactt------------aattta-tgcactgaacactccctatgcacaatttctttt |
2203016 |
T |
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| Q |
101 |
catttaatttatgcatattatatatctaatttcaaagctctggatgtagnnnnnnnnnnnnnnnnnnncaggtttaagatactaaacgctcaagtgtcct |
200 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||||| | ||| ||||||||| |
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| T |
2203017 |
catttaatttttgcatattatatttctaatttcaaagctctggatatagttttttttttccgg-------ggtttaagatactatatgcttaagtgtcct |
2203109 |
T |
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| Q |
201 |
ttctttgacttacaaaatctcccctcttttttctttgtttacagttgaccgagaaggatgtgtacttatcataccttcctctcgcaca |
288 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2203110 |
ttctttgacttacaaaatctcccctcttttttctttctttacagttgactgagaaggatgtgtacttatcataccttcctctcgcaca |
2203197 |
T |
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